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Bayesian Models for Gene Expression With DNA Microarray Data

DNA 微阵列基因表达数据的贝叶斯模型

Two of the critical issues that arise when examining DNA microarray data are (1) determination of which genes best discriminate among the different types of tissue, and (2) characterization of expression patterns in tumor tissues. For (1), there are many genes that characterize DNA expression, and it is of critical importance to try and identify a small set of genes that best discriminate between normal and tumor tissues. For (2), it is critical to be able to characterize…

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Clustering of Translocation Breakpoints

染色体易位断点的聚集分析

Translocation, a physical movement of genetic material from one chromosome to another, can result in the aberrant linkage of two cellular genes. This type of fusion may disrupt cellular function by producing novel, biologically active fused genes, or by triggering the activation of normally quiescent growth-associated genes. Either of these mechanisms provides a putative oncogenic stimulus, and indeed, several gene fusions from translocations have been identified in…

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Statistical Methods in Assessing Agreement

一致性评估的统计方法

Measurements of agreement are needed to assess the acceptability of a new or generic process, methodology, and formulation in areas of laboratory performance, instrument or assay validation, method comparisons, statistical process control, goodness of fit, and individual bioequivalence. In all of these areas, one needs measurements that capture a large proportion of data that are within a meaningful boundary from target values. Target values can be considered random…

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Inference on Regressions with Interval Data on a Regressor or Outcome

解释变量或结果具有区间数据时的回归推断

This paper examines inference on regressions when interval data are available on one variable, the other variables being measured precisely. Let a population be characterized by a distribution P(y, x, v, v0, v1), where y∈R1, x∈Rk, and the real variables (v, v0, v1) satisfy v0≤v≤v1. Let a random sample be drawn from P and the realizations of (y, x, v0, v1) be observed, but not those of v. The problem of interest may be to infer E(y|x, v) or E(v|x). This analysis maintains…

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Evaluating asset‐pricing models using the Hansen–Jagannathan bound: a Monte Carlo investigation

利用 Hansen–Jagannathan 界评价资产定价模型:蒙特卡洛研究

Abstract We use recent statistical tests, based on a ‘distance’ between the model and the Hansen–Jagannathan bound, to compute the rejection rates of true models. For asset‐pricing models with time‐separable preferences, the finite‐sample distribution of the test statistic associated with the risk‐neutral case is extreme, in the sense that critical values based on this distribution deliver type I errors no larger than intended—regardless of risk aversion or the rate of time…

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Stochastic frontier models with random coefficients

含随机系数的随机前沿模型

Abstract The paper proposes a stochastic frontier model with random coefficients to separate technical inefficiency from technological differences across firms, and free the frontier model from the restrictive assumption that all firms must share exactly the same technological possibilities. Inference procedures for the new model are developed based on Bayesian techniques, and computations are performed using Gibbs sampling with data augmentation to allow finite‐sample…

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Quantifying the uncertainty about the half‐life of deviations from PPP

购买力平价偏离半衰期的不确定性量化

Abstract We propose a Bayesian framework in which the uncertainty about the half‐life of deviations from purchasing power parity can be quantified. Based on the responses to a survey study, we propose a prior probability distribution for the half‐life under the recent float intended to capture widely held views among economists. We derive the posterior probability distribution of the half‐life under this consensus prior and confirm the presence of substantial uncertainty…

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Asymptotic Properties of Adaptive designs for Clinical Trials with delayed Response

响应延迟下临床试验自适应设计的渐近性质

For adaptive clinical trials using a generalized Friedman’s urn design, we derive the limiting distribution of the urn composition under staggered entry and delayed response. The stochastic delay mechanism is assumed to depend on both the treatment assigned and the patient’s response. A very general setup is employed with $K$ treatments and $L$ responses. When $L = K =2$, one example of a generalized Friedman’s urn design is the randomized play-the-winner rule. An…

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Multiple hypotheses testing and expected number of type I. errors

多重假设检验与第一类错误的期望次数

The performance of multiple test procedures with respect to error control is an old issue. Assuming that all hypotheses are true we investigate the behavior of the expected number of type I errors (ENE) as a characteristic of certain multiple tests controlling the familywise error rate (FWER) or the false discovery rate (FDR) at a prespecified level. We derive explicit formulas for the distribution of the number of false rejections as well as for the ENE for single-step,…

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Variable Selection for Cox's proportional Hazards Model and Frailty Model

Cox 比例风险模型与脆弱性模型的变量选择

A class of variable selection procedures for parametric models via nonconcave penalized likelihood was proposed in Fan and Li (2001a). It has been shown there that the resulting procedures perform as well as if the subset of significant variables were known in advance. Such a property is called an oracle property. The proposed procedures were illustrated in the context of linear regression, robust linear regression and generalized linear models. In this paper, the nonconcave…

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On weak base Hypotheses and their implications for boosting regression and classification

弱基假设及其对提升回归与分类的含义

When studying the training error and the prediction error for boosting, it is often assumed that the hypotheses returned by the base learner are weakly accurate, or are able to beat a random guesser by a certain amount of difference. It has been an open question how much this difference can be, whether it will eventually disappear in the boosting process or be bounded by a positive amount. This question is crucial for the behavior of both the training error and the…

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Some Results on False Discovery Rate in Stepwise multiple testing procedures

逐步多重检验程序中错误发现率的若干结果

The concept of false discovery rate (FDR) has been receiving increasing attention by researchers in multiple hypotheses testing. This paper produces some theoretical results on the FDR in the context of stepwise multiple testing procedures with dependent test statistics. It was recently shown by Benjamini and Yekutieli that the Benjamini–Hochberg step-up procedure controls the FDR when the test statistics are positively dependent in a certain sense. This paper strengthens…

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Confidence Intervals for a binomial proportion and asymptotic expansions

二项比例置信区间及其渐近展开

We address the classic problem of interval estimation of a binomial proportion. The Wald interval $\hat{p}\pm z_{\alpha/2} n^{-1/2} (\hat{p} (1 - \hat{p}))^{1/2}$ is currently in near universal use. We first show that the coverage properties of the Wald interval are persistently poor and defy virtually all conventional wisdom. We then proceed to a theoretical comparison of the standard interval and four additional alternative intervals by asymptotic expansions of their…

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Edgeworth approximations for semiparametric instrumental variable estimators and test statistics

半参数工具变量估计量与检验统计量的 Edgeworth 近似

We establish the validity of higher order asymptotic expansions to the distribution of a version of the nonlinear semiparametric instrumental variable considered in Newey (1990) as well as to the distribution of a Wald statistic derived from it. We employ local polynomial smoothing with variable bandwidth, which includes local linear, kernel, and [a version of] nearest neighbour estimates as special cases. Our expansions are valid to order n^(-2ϵ) for some 0 < ϵ < ½, where ϵ…

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Determination of cointegrating rank in fractional systems

分数阶系统中的协整秩确定

This paper develops methods of investigating the existence and extent of cointegration in fractionally integrated systems. We focus on stationary series, with some discussion of extension to nonstationarity. The setting is semiparametric, so that modelling is effectively confined to a neighbourhood of frequency zero. We first discuss the definition of fractional cointegration. The initial step of cointegration analysis entails partitioning the vector series into subsets with…

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Propensity Score-Matching Methods for Nonexperimental Causal Studies

This paper considers causal inference and sample selection bias in nonexperimental settings in which (i) few units in the nonexperimental comparison group are comparable to the treatment units, and (ii) selecting a subset of comparison units similar to the treatment units is difficult because units must be compared across a high-dimensional set of pretreatment characteristics. We discuss the use of propensity score-matching methods, and implement them using data from the…

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REGRESSION QUANTILES FOR TIME SERIES

时间序列的回归分位数

In this paper we study nonparametric estimation of regression quantiles for time series data by inverting a weighted Nadaraya–Watson (WNW) estimator of conditional distribution function, which was first used by Hall, Wolff, and Yao (1999, Journal of the American Statistical Association 94, 154–163). First, under some regularity conditions, we establish the asymptotic normality and weak consistency of the WNW conditional distribution estimator for α-mixing time series at both…

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ON INTERCEPT ESTIMATION IN THE SAMPLE SELECTION MODEL

样本选择模型中的截距估计

We provide a proof of the consistency and asymptotic normality of the estimator suggested by Heckman (1990, American Economic Review 80, 313–318) for the intercept of a semiparametrically estimated sample selection model. The estimator is based on “identification at infinity,” which leads to nonstandard convergence rate.

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OPTIMAL INFERENCE WITH MANY INSTRUMENTS

多工具变量情形下的最优推断

In this paper, I derive the efficiency bound of the structural parameter in a linear simultaneous equations model with many instruments. The bound is derived by applying a convolution theorem to Bekker's (1994, Econometrica 62, 657–681) asymptotic approximation, where the number of instruments grows to infinity at the same rate as the sample size. Usual instrumental variables estimators with a small number of instruments are heuristically argued to be efficient estimators in…

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THE INVARIANCE PRINCIPLE FOR LINEAR PROCESSES WITH APPLICATIONS

线性过程的不变性原理及其应用

Let X t be a linear process defined by X t = [sum ] k=0 ∞ ψ k ε t − k , where {ψ k , k ≥ 0} is a sequence of real numbers and {ε k , k = 0,±1,±2,...} is a sequence of random variables. Two basic results, on the invariance principle of the partial sum process of the X t converging to a standard Wiener process on [0,1], are presented in this paper. In the first result, we assume that the innovations ε k are independent and identically distributed random variables but do not…

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ON THE JACKKNIFE-AFTER-BOOTSTRAP METHOD FOR DEPENDENT DATA AND ITS CONSISTENCY PROPERTIES

依赖数据的 bootstrap 后 jackknife 方法及其一致性

Motivated by Efron (1992, Journal of the Royal Statistical Society, Series B 54, 83–111), this paper proposes a version of the moving block jackknife as a method of estimating standard errors of block-bootstrap estimators under dependence. As in the case of independent and identically distributed (i.i.d.) observations, the proposed method merely regroups the values of a statistic from different bootstrap replicates to produce an estimate of its standard error. Consistency of…

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