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Analysis of Variance of Tensor Product Reproducing Kernel Hilbert Spaces on Metric Spaces

度量空间上张量积再生核希尔伯特空间的方差分析

Many methods have been developed to analyze complex data, such as non-Euclidean shape, network, and manifold data. However, there is a lack of methods for studying interactions among complex data. In this article, we first propose a novel kernel function for a metric space and construct its associated reproducing kernel Hilbert space. The new nonstationary kernel function provides a flexible and powerful tool for learning complex structures in non-Euclidean data. We then…

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Smoothing Spline Semiparametric Density Models

平滑样条半参数密度模型

Jiahui Yua, Jian Shib, Anna Liuc & Yuedong Wangd*a Department of Mathematics and Statistics, Boston University, Boston, MAb PayPal, San Jose, CAc Department of Mathematics and Statistics, University of Massachusetts, Amherst, MAd Department Statistics and Applied Probability, University of California, Santa Barbara, CAColor versions of one or more of the figures in the article can be found online at www.tandfonline.com/r/JASA.Supplementary materials for this article are…

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Variance Estimation in the Analysis of Microarray Data

微阵列数据分析中的方差估计

Summary Microarrays are one of the most widely used high throughput technologies. One of the main problems in the area is that conventional estimates of the variances that are required in the t-statistic and other statistics are unreliable owing to the small number of replications. Various methods have been proposed in the literature to overcome this lack of degrees of freedom problem. In this context, it is commonly observed that the variance increases proportionally with…

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Optimal Shrinkage Estimation of Variances With Applications to Microarray Data Analysis

方差的最优收缩估计及微阵列数据应用

Microarray technology allows a scientist to study genomewide patterns of gene expression. Thousands of individual genes are measured with a relatively small number of replications, which poses challenges to traditional statistical methods. In particular, the gene-specific estimators of variances are not reliable and gene-by-gene tests have low powers. In this article we propose a family of shrinkage estimators for variances raised to a fixed power. We derive optimal…

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Estimating residual variance in nonparametric regression using least squares

利用最小二乘估计非参数回归的残差方差

We propose a new estimator for the error variance in a nonparametric regression model. We estimate the error variance as the intercept in a simple linear regression model with squared differences of paired observations as the dependent variable and squared distances between the paired covariates as the regressor. For the special case of a one-dimensional domain with equally spaced design points, we show that our method reaches an asymptotic optimal rate which is not achieved…

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Smoothing Spline Nonlinear Nonparametric Regression Models

平滑样条非线性非参数回归模型

Almost all of the current nonparametric regression methods, such as smoothing splines, generalized additive models, and varyingcoefficients models, assume a linear relationship when nonparametric functions are regarded as parameters. In this article we propose a general class of smoothing spline nonlinear nonparametric models that allow nonparametric functions to act nonlinearly. They arise in many fields as either theoretical or empirical models. Our new estimation methods…

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Semiparametric Nonlinear Mixed-Effects Models and Their Applications

半参数非线性混合效应模型及其应用

Nonlinear mixed effects models (NLMMs) and self-modeling nonlinear regression (SEMOR) models are often used to fit repeated measures data. They use a common function shared by all subjects to model variation within each subject and some fixed and/or random parameters to model variation between subjects. The parametric NLMM may be too restrictive, and the semiparametric SEMOR model ignores correlations within each subject. In this article we propose a class of semiparametric…

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A Signal Extraction Approach to Modeling Hormone Time Series with Pulses and a Changing Baseline

用信号提取方法建模具有脉冲与变化基线的激素时间序列

Hormones serve as regulating signals for many biological processes. In recent years, it was determined that many hormones are secreted in a pulsatile manner and that the pulsatile secretion pattern, in addition to the absolute concentration level, is important in regulating biological processes. Consequently, it is necessary to characterize the latent secretion patterns from measurements of concentration levels. The characterization is complicated by the presence of a…

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A Signal Extraction Approach to Modeling Hormone Time Series with Pulses and a Changing Baseline

含脉冲与变化基线的激素时间序列信号提取方法

Hormones serve as regulating signals for many biological processes. In recent years, it was determined that many hormones are secreted in a pulsatile manner and that the pulsatile secretion pattern, in addition to the absolute concentration level, is important in regulating biological processes. Consequently, it is necessary to characterize the latent secretion patterns from measurements of concentration levels. The characterization is complicated by the presence of a…

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Smoothing Spline Models with Correlated Random Errors

具有相关随机误差的平滑样条模型

Spline-smoothing techniques are commonly used to estimate the mean function in a nonparametric regression model. Their performances depend greatly on the choice of smoothing parameters. Many methods of selecting smoothing parameters such as generalized maximum likelihood (GML), generalized cross-validation (GCV), and unbiased risk (UBR), have been developed under the assumption of independent observations. They tend to underestimate smoothing parameters when data are…

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Smoothing Spline Models with Correlated Random Errors

具有相关随机误差的平滑样条模型

Spline-smoothing techniques are commonly used to estimate the mean function in a nonparametric regression model. Their performances depend greatly on the choice of smoothing parameters. Many methods of selecting smoothing parameters such as generalized maximum likelihood (GML), generalized cross-validation (GCV), and unbiased risk (UBR), have been developed under the assumption of independent observations. They tend to underestimate smoothing parameters when data are…

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Mixed Effects Smoothing Spline Analysis of Variance

混合效应平滑样条方差分析

Summary We propose a general family of nonparametric mixed effects models. Smoothing splines are used to model the fixed effects and are estimated by maximizing the penalized likelihood function. The random effects are generic and are modelled parametrically by assuming that the covariance function depends on a parsimonious set of parameters. These parameters and the smoothing parameter are estimated simultaneously by the generalized maximum likelihood method. We derive a…

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