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Conditioning on posterior samples for flexible frequentist goodness-of-fit testing

条件于后验样本的灵活频率学派拟合优度检验

Summary Tests of goodness of fit are used in nearly every domain where statistics is applied. One powerful and flexible approach is to sample artificial datasets that are exchangeable with the real data under the null hypothesis (but not under the alternative), as this allows the analyst to conduct a valid test using any test statistic they desire. Such sampling is typically done by conditioning on either an exact or an approximate sufficient statistic, but existing methods…

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Conformal Prediction After Data-Dependent Model Selection

数据依赖模型选择后的保形预测

Given a family of pretrained models and a hold-out set, how can we construct a valid conformal prediction set while selecting a model that minimizes the width of the set? If we use the same hold-out data set both to select a model (the model that yields the smallest conformal prediction sets) and then to construct a conformal prediction set based on that selected model, we suffer a loss of coverage due to selection bias. Alternatively, we could further split the data to…

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Algorithmic stability implies training-conditional coverage for distribution-free prediction methods

算法稳定性保证分布无关预测方法的训练条件覆盖

In a supervised learning problem, given a predicted value that is the output of some trained model, how can we quantify our uncertainty around this prediction? Distribution-free predictive inference aims to construct prediction intervals around this output, with valid coverage that does not rely on assumptions on the distribution of the data or the nature of the model training algorithm. Existing methods in this area, including conformal prediction and jackknife+, offer…

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Conformal prediction with local weights: randomization enables robust guarantees

局部加权共形预测:随机化带来稳健保证

Abstract In this work, we consider the problem of building distribution-free prediction intervals with finite-sample conditional coverage guarantees. Conformal prediction (CP) is an increasingly popular framework for building such intervals with distribution-free guarantees, but these guarantees only ensure marginal coverage: the probability of coverage is averaged over both the training and test data, meaning that there might be substantial undercoverage within certain…

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Conformalized survival analysis with adaptive cut-offs

采用自适应截断阈值的共形生存分析

Summary This paper introduces an assumption-lean method that constructs valid and efficient lower predictive bounds for survival times with censored data. We build on recent work by Candès et al. (2023), whose approach first subsets the data to discard any data points with early censoring times and then uses a reweighting technique, namely, weighted conformal inference (Tibshirani et al., 2019), to correct for the distribution shift introduced by this subsetting procedure.…

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A power analysis for model-X knockoffs with ℓp-regularized statistics

使用 ℓp 正则化统计量的 Model-X knockoffs 功效分析

Variable selection properties of procedures utilizing penalized-likelihood estimates is a central topic in the study of high-dimensional linear regression problems. Existing literature emphasizes the quality of ranking of the variables by such procedures as reflected in the receiver operating characteristic curve or in prediction performance. Specifically, recent works have harnessed modern theory of approximate message-passing (AMP) to obtain, in a particular setting, exact…

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Half-trek criterion for identifiability of latent variable models

潜变量模型可识别性的半途径准则

We consider linear structural equation models with latent variables and develop a criterion to certify whether the direct causal effects between the observable variables are identifiable based on the observed covariance matrix. Linear structural equation models assume that both observed and latent variables solve a linear equation system featuring stochastic noise terms. Each model corresponds to a directed graph whose edges represent the direct effects that appear as…

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Testing goodness-of-fit and conditional independence with approximate co-sufficient sampling

使用近似共充分抽样检验拟合优度与条件独立性

Goodness-of-fit (GoF) testing is ubiquitous in statistics, with direct ties to model selection, confidence interval construction, conditional independence testing, and multiple testing, just to name a few applications. While testing the GoF of a simple (point) null hypothesis provides an analyst great flexibility in the choice of test statistic while still ensuring validity, most GoF tests for composite null hypotheses are far more constrained, as the test statistic must…

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Predictive inference with the jackknife+

使用 jackknife+ 的预测推断

This paper introduces the jackknife+, which is a novel method for constructing predictive confidence intervals. Whereas the jackknife outputs an interval centered at the predicted response of a test point, with the width of the interval determined by the quantiles of leave-one-out residuals, the jackknife+ also uses the leave-one-out predictions at the test point to account for the variability in the fitted regression function. Assuming exchangeable training samples, we…

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Robust inference with knockoffs

Knockoff 方法的稳健推断

We consider the variable selection problem, which seeks to identify important variables influencing a response $Y$ out of many candidate features $X_{1},\ldots ,X_{p}$. We wish to do so while offering finite-sample guarantees about the fraction of false positives—selected variables $X_{j}$ that in fact have no effect on $Y$ after the other features are known. When the number of features $p$ is large (perhaps even larger than the sample size $n$), and we have no prior…

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The Conditional Permutation Test for Independence While Controlling for Confounders

控制混杂因素的条件独立性置换检验

Summary We propose a general new method, the conditional permutation test, for testing the conditional independence of variables X and Y given a potentially high dimensional random vector Z that may contain confounding factors. The test permutes entries of X non-uniformly, to respect the existing dependence between X and Z and thus to account for the presence of these confounders. Like the conditional randomization test of Candès and co-workers in 2018, our test relies on…

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A knockoff filter for high-dimensional selective inference

用于高维选择后推断的knockoff过滤器

This paper develops a framework for testing for associations in a possibly high-dimensional linear model where the number of features/variables may far exceed the number of observational units. In this framework, the observations are split into two groups, where the first group is used to screen for a set of potentially relevant variables, whereas the second is used for inference over this reduced set of variables; we also develop strategies for leveraging information from…

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Multiple Testing with the Structure-Adaptive Benjamini–Hochberg Algorithm

结构自适应 Benjamini–Hochberg 多重检验算法

Summary In multiple-testing problems, where a large number of hypotheses are tested simultaneously, false discovery rate (FDR) control can be achieved with the well-known Benjamini–Hochberg procedure, which a(0, 1]dapts to the amount of signal in the data, under certain distributional assumptions. Many modifications of this procedure have been proposed to improve power in scenarios where the hypotheses are organized into groups or into a hierarchy, as well as other…

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ROCKET: Robust confidence intervals via Kendall’s tau for transelliptical graphical models

ROCKET:利用肯德尔相关系数为变换椭圆图模型构造稳健置信区间

Understanding complex relationships between random variables is of fundamental importance in high-dimensional statistics, with numerous applications in biological and social sciences. Undirected graphical models are often used to represent dependencies between random variables, where an edge between two random variables is drawn if they are conditionally dependent given all the other measured variables. A large body of literature exists on methods that estimate the structure…

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The p -filter: Multilayer False Discovery Rate Control for Grouped Hypotheses

p-filter:分组假设的多层错误发现率控制

Summary In many practical applications of multiple testing, there are natural ways to partition the hypotheses into groups by using the structural, spatial or temporal relatedness of the hypotheses, and this prior knowledge is not used in the classical Benjamini–Hochberg procedure for controlling the false discovery rate (FDR). When one can define (possibly several) such partitions, it may be desirable to control the group FDR simultaneously for all partitions (as special…

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EigenPrism: Inference for High Dimensional Signal-to-Noise Ratios

EigenPrism:高维信噪比推断

Summary Consider the following three important problems in statistical inference: constructing confidence intervals for the error of a high dimensional (p > n) regression estimator, the linear regression noise level and the genetic signal-to-noise ratio of a continuous-valued trait (related to the heritability). All three problems turn out to be closely related to the little-studied problem of performing inference on the l2-norm of the signal in high dimensional linear…

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Controlling the false discovery rate via knockoffs

通过 Knockoff 变量控制错误发现率

In many fields of science, we observe a response variable together with a large number of potential explanatory variables, and would like to be able to discover which variables are truly associated with the response. At the same time, we need to know that the false discovery rate (FDR)—the expected fraction of false discoveries among all discoveries—is not too high, in order to assure the scientist that most of the discoveries are indeed true and replicable. This paper…

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