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Sparse semiparametric canonical correlation analysis for data of mixed types

混合类型数据的稀疏半参数典型相关分析

Summary Canonical correlation analysis investigates linear relationships between two sets of variables, but it often works poorly on modern datasets because of high dimensionality and mixed data types such as continuous, binary and zero-inflated. To overcome these challenges, we propose a semiparametric approach to sparse canonical correlation analysis based on the Gaussian copula. The main result of this paper is a truncated latent Gaussian copula model for data with excess…

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Semiparametric analysis of complex polygenic gene-environment interactions in case-control studies

病例对照研究中复杂多基因与环境交互作用的半参数分析

Many methods have recently been proposed for efficient analysis of case-control studies of gene-environment interactions using a retrospective likelihood framework that exploits the natural assumption of gene-environment independence in the underlying population. However, for polygenic modelling of gene-environment interactions, which is a topic of increasing scientific interest, applications of retrospective methods have been limited due to a requirement in the literature…

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Semiparametric Analysis of Heterogeneous Data Using Varying-Scale Generalized Linear Models

利用变尺度广义线性模型对异质数据进行半参数分析

This article describes a class of heteroscedastic generalized linear regression models in which a subset of the regression parameters are rescaled nonparametrically, and develops efficient semiparametric inferences for the parametric components of the models. Such models provide a means to adapt for heterogeneity in the data due to varying exposures, varying levels of aggregation, and so on. The class of models considered includes generalized partially linear models and…

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Stochastic Approximation in Monte Carlo Computation

蒙特卡洛计算中的随机逼近

The Wang–Landau (WL) algorithm is an adaptive Markov chain Monte Carlo algorithm used to calculate the spectral density for a physical system. A remarkable feature of the WL algorithm is that it is not trapped by local energy minima, which is very important for systems with rugged energy landscapes. This feature has led to many successful applications of the algorithm in statistical physics and biophysics; however, there does not exist rigorous theory to support its…

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Efficient Estimation of Population-Level Summaries in General Semiparametric Regression Models

一般半参数回归模型中总体汇总量的高效估计

This article considers a wide class of semiparametric regression models in which interest focuses on population-level quantities that combine both the parametric and the nonparametric parts of the model. Special cases in this approach include generalized partially linear models, generalized partially linear single-index models, structural measurement error models, and many others. For estimating the parametric part of the model efficiently, profile likelihood kernel…

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Locally Efficient Estimators for Semiparametric Models With Measurement Error

半参数测量误差模型的局部有效估计量

We derive constructive locally efficient estimators in semiparametric measurement error models. The setting is one in which the likelihood function depends on variables measured with and without error, where the variables measured without error can be modeled nonparametrically. The algorithm is based on backfitting. We show that if one adopts a parametric model for the latent variable measured with error and if this model is correct, then the estimator is semiparametric…

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Semiparametric Bayesian Analysis of Matched Case-Control Studies With Missing Exposure

暴露缺失时匹配病例对照研究的半参数贝叶斯分析

This article considers Bayesian analysis of matched case-control problems when one of the covariates is partially missing. Within the likelihood context, the standard approach to this problem is to posit a fully parametric model among the controls for the partially missing covariate as a function of the covariates in the model and the variables making up the strata. Sometimes the strata effects are ignored at this stage. Our approach differs not only in that it is Bayesian,…

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Efficient Semiparametric Marginal Estimation for Longitudinal/Clustered Data

纵向与聚类数据的有效半参数边际估计

We consider marginal generalized semiparametric partially linear models for clustered data. Lin and Carroll derived the semiparametric efficient score function for this problem in the multivariate Gaussian case, but they were unable to construct a semiparametric efficient estimator that actually achieved the semiparametric information bound. Here we propose such an estimator and generalize the work to marginal generalized partially linear models. We investigate asymptotic…

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Nonlinear and Nonparametric Regression and Instrumental Variables

We consider regression when the predictor is measured with error and an instrumental variable (IV) is available. The regression function can be modeled linearly, nonlinearly, or nonparametrically. Our major new result shows that the regression function and all parameters in the measurement error model are identified under relatively weak conditions, much weaker than previously known to imply identifiability. In addition, we exploit a characterization of the IV estimator as a…

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Estimation in Partially Linear Models With Missing Covariates

The partially linear model Y = XTβ + ν(Z) + ϵ has been studied extensively when data are completely observed. In this article, we consider the case where the covariate X is sometimes missing, with missingness probability π depending on (Y, Z). New methods are developed for estimating β and ν(·). Our methods are shown to outperform asymptotically methods based only on the complete data. Asymptotic efficiency is discussed, and the semiparametric efficient score function is…

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More Efficient Local Polynomial Estimation in Nonparametric Regression With Autocorrelated Errors

自相关误差下更高效的非参数局部多项式估计

We propose a modification of local polynomial time series regression estimators that improves efficiency when the innovation process is autocorrelated. The procedure is based on a pre-whitening transformation of the dependent variable that must be estimated from the data. We establish the asymptotic distribution of our estimator under weak dependence conditions. We show that the proposed estimation procedure is more efficient than the conventional local polynomial method. We…

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Wavelet-Based Nonparametric Modeling of Hierarchical Functions in Colon Carcinogenesis

结肠癌发生中层级函数数据的小波非参数建模

In this article we develop new methods for analyzing the data from an experiment using rodent models to investigate the effect of type of dietary fat on O6-methylguanine-DNA-methyltransferase (MGMT), an important biomarker in early colon carcinogenesis. The data consist of observed profiles over a spatial variable contained within a two-stage hierarchy, a structure that we dub hierarchical functional data. We present a new method providing a unified framework for modeling…

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Marginal Longitudinal Nonparametric Regression

纵向边际模型中的非参数回归

We consider nonparametric regression in a longitudinal marginal model of generalized estimating equation (GEE) type with a time-varying covariate in the situation where the number of observations per subject is finite and the number of subjects is large. In such models, the basic shape of the regression function is affected only by the covariate values and not otherwise by the ordering of the observations. Two methods of estimating the nonparametric function can be…

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Bayesian Smoothing and Regression Splines for Measurement Error Problems

测量误差问题中的贝叶斯平滑样条与回归样条

In the presence of covariate measurement error, estimating a regression function nonparametrically is extremely difficult, the problem being related to deconvolution. Various frequentist approaches exist for this problem, but to date there has been no Bayesian treatment. In this article we describe Bayesian approaches to modeling a flexible regression function when the predictor variable is measured with error. The regression function is modeled with smoothing splines and…

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A Note on the Efficiency of Sandwich Covariance Matrix Estimation

夹心协方差矩阵估计效率的一则札记

The sandwich estimator, also known as robust covariance matrix estimator, heteroscedasticity-consistent covariance matrix estimate, or empirical covariance matrix estimator, has achieved increasing use in the econometric literature as well as with the growing popularity of generalized estimating equations. Its virtue is that it provides consistent estimates of the covariance matrix for parameter estimates even when the fitted parametric model fails to hold or is not even…

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Semiparametric Regression for Clustered Data Using Generalized Estimating Equations

利用广义估计方程进行聚类数据的半参数回归

We consider estimation in a semiparametric generalized linear model for clustered data using estimating equations. Our results apply to the case where the number of observations per cluster is finite, whereas the number of clusters is large. The mean of the outcome variable μ is of the form g(μ) = XTβ + θ(T), where g(·) is a link function, X and T are covariates, β is an unknown parameter vector, and θ(t) is an unknown smooth function. Kernel estimating equations proposed…

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Parametric and Nonparametric Methods for Understanding the Relationship Between Carcinogen-Induced DNA Adduct Levels in Distal and Proximal Regions of the Colon

结肠远端与近端致癌物诱导 DNA 加合物水平关系的参数与非参数方法

An important problem in studying the etiology of colon cancer is understanding the relationship between DNA adduct levels (broadly, DNA damage) in cells within colonic crypts in distal and proximal parts of the colon, following treatment with a carcinogen and different types of diet. In particular, it is important to understand whether rats who have elevated adduct levels in particular positions in distal region crypts also have elevated levels in the same positions of the…

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