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Using shared genetic controls in studies of gene-environment interactions

基因与环境交互作用研究中共享遗传对照的使用

With the advent of modern genomic methods to adjust for population stratification, the use of external or publicly available controls has become an attractive option for reducing the cost of large-scale case-control genetic association studies. In this article, we study the estimation of joint effects of genetic and environmental exposures from a case-control study where data on genome-wide markers are available on the cases and a set of external controls while data on…

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Multiple imputation in quantile regression

分位数回归中的多重插补

We propose a multiple imputation estimator for parameter estimation in a quantile regression model when some covariates are missing at random. The estimation procedure fully utilizes the entire dataset to achieve increased efficiency, and the resulting coefficient estimators are root-n consistent and asymptotically normal. To protect against possible model misspecification, we further propose a shrinkage estimator, which automatically adjusts for possible bias. The finite…

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Nonparametric additive regression for repeatedly measured data

重复测量数据的非参数加性回归

We develop an easily computed smooth backfitting algorithm for additive model fitting in repeated measures problems. Our methodology easily copes with various settings, such as when some covariates are the same over repeated response measurements. We allow for a working covariance matrix for the regression errors, showing that our method is most efficient when the correct covariance matrix is used. The component functions achieve the known asymptotic variance lower bound for…

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Joint modelling of paired sparse functional data using principal components

利用主成分联合建模成对稀疏函数数据

We propose a modelling framework to study the relationship between two paired longitudinally observed variables. The data for each variable are viewed as smooth curves measured at discrete time-points plus random errors. While the curves for each variable are summarized using a few important principal components, the association of the two longitudinal variables is modelled through the association of the principal component scores. We use penalized splines to model the mean…

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Nonparametric variance estimation in the analysis of microarray data: a measurement error approach

微阵列数据的非参数方差估计:测量误差方法

This article investigates the effects of measurement error on the estimation of nonparametric variance functions. We show that either ignoring measurement error or direct application of the simulation extrapolation, SIMEX, method leads to inconsistent estimators. Nevertheless, the direct SIMEX method can reduce bias relative to a naive estimator. We further propose a permutation SIMEX method which leads to consistent estimators in theory. The performance of both SIMEX…

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An asymptotic theory for model selection inference in general semiparametric problems

一般半参数问题中模型选择推断的渐近理论

Hjort & Claeskens (2003) developed an asymptotic theory for model selection, model averaging and subsequent inference using likelihood methods in parametric models, along with associated confidence statements. In this article, we consider a semiparametric version of this problem, wherein the likelihood depends on parameters and an unknown function, and model selection/averaging is to be applied to the parametric parts of the model. We show that all the results of Hjort &…

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Partially linear models with missing response variables and error-prone covariates

响应缺失且协变量存在测量误差的部分线性模型

We consider partially linear models of the form Y = X(T)beta + nu(Z) + epsilon when the response variable Y is sometimes missing with missingness probability pi depending on (X, Z), and the covariate X is measured with error, where nu(z) is an unspecified smooth function. The missingness structure is therefore missing not at random, rather than the usual missing at random. We propose a class of semiparametric estimators for the parameter of interest beta, as well as for the…

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Semiparametric regression for clustered data

聚类数据的半参数回归

We consider estimation in a semiparametric partially generalised linear model for clustered data using estimating equations. A marginal model is assumed where the mean of the outcome variable depends on some covariates parametrically and a cluster‐level covariate nonparametrically. A profile‐kernel method allowing for working correlation matrices is developed. We show that the nonparametric part of the model can be estimated using standard nonparametric methods, including…

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Local linear regression for generalized linear models with missing data

缺失数据下广义线性模型的局部线性回归

Fan, Heckman and Wand proposed locally weighted kernel polynomial regression methods for generalized linear models and quasilikelihood functions. When the covariate variables are missing at random, we propose a weighted estimator based on the inverse selection probability weights. Distribution theory is derived when the selection probabilities are estimated nonparametrically. We show that the asymptotic variance of the resulting nonparametric estimator of the mean function…

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Generalized Partially Linear Single-Index Models

广义部分线性单指标模型

The typical generalized linear model for a regression of a response Y on predictors (X, Z) has conditional mean function based on a linear combination of (X, Z). We generalize these models to have a nonparametric component, replacing the linear combination α T 0X + β T 0Z by η0(α T 0X) + β T 0Z, where η0(·) is an unknown function. We call these generalized partially linear single-index models (GPLSIM). The models include the “single-index” models, which have β0 = 0. Using…

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Prospective Analysis of Logistic Case-Control Studies

Logistic 病例对照研究的前瞻式分析

In a classical case-control study, Prentice and Pyke proposed to ignore the study design and instead base estimation and inference on a random sampling (i.e., prospective) formulation. We generalize this prospective formulation of case-control studies to include multiplicative models, stratification, missing data, measurement error, robustness, and other examples. The resulting estimators, which ignore the case-control study aspect and instead are based on a random-sampling…

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Dimension Reduction in a Semiparametric Regression Model with Errors in Covariates

协变量含测量误差的半参数回归模型中的降维

We consider a semiparametric estimation method for general regression models when some of the predictors are measured with error. The technique relies on a kernel regression of the "true" covariate on all the observed covariates and surrogates. This requires a nonparametric regression in as many dimensions as there are covariates and surrogates. The usual theory copes with such higher-dimensional problems by using higher-order kernels, but this is unrealistic for most…

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A Semiparametric Correction for Attenuation

衰减偏差的半参数校正

A correction method is proposed for models including the generalized linear model when the covariate is measured with error. The method requires a separate validation data set that consists of the surrogate W and the true covariate X or an unbiased estimate X⊃ of X. We do not require the classical additive measurement error model in which the surrogate is unbiased for the true covariates. We first obtain an estimate of E(X|W) by using nonparametric kernel regression of X or…

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A Semiparametric Correction for Attenuation

测量误差衰减偏误的半参数修正

A correction method is proposed for models including the generalized linear model when the covariate is measured with error. The method requires a separate validation data set that consists of the surrogate W and the true covariate X or an unbiased estimate X⊃ of X. We do not require the classical additive measurement error model in which the surrogate is unbiased for the true covariates. We first obtain an estimate of E(X|W) by using nonparametric kernel regression of X or…

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Estimation of Lag in Misregistered, Averaged Images

像素平均后错位图像的位移估计

In problems where the recorded signal comprises two or more bands (i.e., wavelengths), it is often the case that the bands are not perfectly aligned in the focal plane. Such misregistration may be caused by atmospheric or oceanographic effects, which refract different bands to differing degrees, or it may result from features of the design of the recording equipment. This article develops two methods for estimating the lag, or the amount by which the bands are out of…

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Fitting Heteroscedastic Regression Models

异方差回归模型的拟合

In heteroscedastic regression models assumptions about the error distribution determine the method of consistent estimation of parameters. For example, consider the case where the model specifies the regression and dispersion functions for the data but robustness is of concern and one wishes to use least absolute error regressions. Except in certain special circumstances, parameter estimates obtained in this way are inconsistent. In this article we expand the heteroscedastic…

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Estimation of Lag in Misregistered, Averaged Images

错位且经像素平均的图像中的位移估计

In problems where the recorded signal comprises two or more bands (i.e., wavelengths), it is often the case that the bands are not perfectly aligned in the focal plane. Such misregistration may be caused by atmospheric or oceanographic effects, which refract different bands to differing degrees, or it may result from features of the design of the recording equipment. This article develops two methods for estimating the lag, or the amount by which the bands are out of…

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Fitting Heteroscedastic Regression Models

异方差回归模型的拟合

In heteroscedastic regression models assumptions about the error distribution determine the method of consistent estimation of parameters. For example, consider the case where the model specifies the regression and dispersion functions for the data but robustness is of concern and one wishes to use least absolute error regressions. Except in certain special circumstances, parameter estimates obtained in this way are inconsistent. In this article we expand the heteroscedastic…

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On Robustness in the Logistic Regression Model

逻辑回归模型的稳健性

SUMMARY We investigate robustness in the logistic regression model. Copas has studied two forms of robust estimator: A robust-resistant estimate of Pregibon and an estimate based on a misclassification model. He concluded that robust-resistant estimates are much more biased in small samples than the usual logistic estimate is and recommends a bias-corrected version of the misclassification estimate. We show that there are other versions of robust-resistant estimates which…

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Case-Control Studies With Errors in Covariates

协变量存在测量误差的病例对照研究

We devise methods for estimating the parameters of a prospective logistic model with dichotomous response D and arbitrary covariates X from case-control data when these covariates are measured with error. We suppose that some fraction of the cases and controls provide only the error-prone covariate measurements, W (the “incomplete” or “reduced” data), whereas some of the cases and controls provide measurements on X and W (the “complete” data). We assume a measurement error…

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On Robust Estimation in Logistic Case-Control Studies

病例对照研究中 Logistic 回归的稳健估计

Consider a logistic regression model under case-control sampling. Prentice & Pyke (1979) showed that the logistic slope estimates with case-control sampling may be estimated from a standard prospective logistic regression program and that the resulting standard errors are asymptotically correct. Since logistic regression estimates are nonrobust, we propose and analyze robust estimates of the slope parameters. We focus specifically on estimates which downweight observations…

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On robust estimation in logistic case-control studies

病例对照研究中逻辑回归的稳健估计

Consider a logistic regression model under case-control sampling. Prentice & Pyke (1979) showed that the logistic slope estimates with case-control sampling may be estimated from a standard prospective logistic regression program and that the resulting standard errors are asymptotically correct. Since logistic regression estimates are nonrobust, we propose and analyze robust estimates of the slope parameters. We focus specifically on estimates which downweight observations…

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On One-Step GM Estimates and Stability of Inferences in Linear Regression

线性回归中的一步 GM 估计与推断稳定性

The folklore on one-step estimation is that it inherits the breakdown point of the preliminary estimator and yet has the same large sample distribution as the fully iterated version as long as the preliminary estimate converges faster than n –1/4, where n is the sample size. We investigate the extent to which this folklore is valid for one-step GM estimators and their associated standard errors in linear regression. We find that one-step GM estimates based on Newton-Raphson…

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