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A Generalized Integration Approach to Association Analysis with Multi-category Outcome: An Application to a Tumor Sequencing Study of Colorectal Cancer and Smoking

多类别结局关联分析的广义信息整合:结直肠癌与吸烟应用

Cancer is a heterogeneous disease, and rapid progress in sequencing and -omics technologies has enabled researchers to characterize tumors comprehensively. This has stimulated an intensive interest in studying how risk factors are associated with various tumor heterogeneous features. The Cancer Prevention Study-II (CPS-II) cohort is one of the largest prospective studies, particularly valuable for elucidating associations between cancer and risk factors. In this paper, we…

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Risk Projection for Time-to-Event Outcome Leveraging Summary Statistics With Source Individual-Level Data

结合目标总体汇总统计与源总体个体数据的事件发生风险外推

Predicting risks of chronic diseases has become increasingly important in clinical practice. When a prediction model is developed in a cohort, there is a great interest to apply the model to other cohorts. Due to potential discrepancy in baseline disease incidences between different cohorts and shifts in patient composition, the risk predicted by the model built in the source cohort often under- or over-estimates the risk in a new cohort. In this article, we assume the…

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Marginalized Frailty-Based Illness-Death Model: Application to the UK-Biobank Survival Data

基于边际化脆弱性的疾病—死亡模型:英国生物样本库应用

The UK Biobank is a large-scale health resource comprising genetic, environmental, and medical information on approximately 500,000 volunteer participants in the United Kingdom, recruited at ages 40–69 during the years 2006–2010. The project monitors the health and well-being of its participants. This work demonstrates how these data can be used to yield the building blocks for an interpretable risk-prediction model, in a semiparametric fashion, based on known genetic and…

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On Estimation of the Hazard Function From Population-Based Case–Control Studies

基于人群的病例对照研究中危险率函数的估计

The population-based case-control study design has been widely used for studying the etiology of chronic diseases. It is well established that the Cox proportional hazards model can be adapted to the case-control study and hazard ratios can be estimated by (conditional) logistic regression model with time as either a matched set or a covariate (Prentice and Breslow, 1978). However, the baseline hazard function, a critical component in absolute risk assessment, is…

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Estimating Risk With Time-to-Event Data: An Application to the Women’s Health Initiative

事件发生时间数据的风险估计:妇女健康倡议应用

Accurate and individualized risk prediction is critical for population control of chronic diseases such as cancer and cardiovascular disease. Large cohort studies provide valuable resources for building risk prediction models, as the risk factors are collected at the baseline and subjects are followed over time until disease occurrence or termination of the study. However, for rare diseases the baseline risk may not be estimated reliably based on cohort data only, due to…

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Case-control survival analysis with a general semiparametric shared frailty model: A pseudo full likelihood approach

一般半参数共享脆弱性模型下的病例对照生存分析:伪完整似然方法

In this work we deal with correlated failure time (age at onset) data arising from population-based, case-control studies, where case and control probands are selected by population-based sampling and an array of risk factor measures is collected for both cases and controls and their relatives. Parameters of interest are effects of risk factors on the failure time hazard function and within-family dependencies among failure times after adjusting for the risk factors. Due to…

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Prospective survival analysis with a general semiparametric shared frailty model: A pseudo full likelihood approach

一般半参数共享脆弱性模型的前瞻生存分析:伪完全似然方法

We provide a simple estimation procedure for a general frailty model for the analysis of prospective correlated failure times. The large-sample properties of the proposed estimators of both the regression coefficient vector and the dependence parameter are described, and consistent variance estimators are given. A brief outline of the proofs is given. In a simulation study under the widely used gamma frailty model, our proposed approach was found to have essentially the same…

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Estimation of Dependence Between Paired Correlated Failure Times in the Presence of Covariate Measurement Error

协变量测量误差下配对失效时间依赖性的估计

Summary In many biomedical studies, covariates are subject to measurement error. Although it is well known that the regression coefficients estimators can be substantially biased if the measurement error is not accommodated, there has been little study of the effect of covariate measurement error on the estimation of the dependence between bivariate failure times. We show that the dependence parameter estimator in the Clayton–Oakes model can be considerably biased if the…

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A Class of Weighted Dependence Measures for Bivariate Failure Time Data

二元失效时间数据的一类加权依赖度量

Summary This paper considers a class of summary measures of the dependence between a pair of failure time variables over a finite follow-up region. The class consists of measures that are weighted averages of local dependence measures, and includes the cross-ratio-measure and finite region version of Kendall's τ; recently proposed by the authors. Two new special cases are identified that can avoid the need to estimate the bivariate survivor function and that admit explicit…

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