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Limiting laws and consistent estimation criteria for fixed and diverging number of spiked eigenvalues

固定与增长数量的尖峰特征值:极限规律和一致估计准则

In this paper, we study limiting laws and consistent estimation criteria for the extreme eigenvalues in a spiked covariance model of dimension p with the number of spikes k. Allowing both p and k to diverge, we derive limiting distributions of the spiked sample eigenvalues using random matrix theory techniques. Notably, our results are established under a general spiked covariance model, where the bulk eigenvalues are allowed to differ, and the spiked eigenvalues need not be…

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High-Dimensional Covariance Regression with Application to Co-Expression QTL Detection

高维协方差回归及其在共表达 QTL 检测中的应用

While covariance matrices have been widely studied in many scientific fields, relatively limited progress has been made on estimating conditional covariances that permits a large covariance matrix to vary with high-dimensional subject-level covariates. In this paper, we present a new sparse covariance regression framework that models the covariance matrix as a function of subject-level covariates. In the context of co-expression quantitative trait locus (QTL) studies, our…

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Stochastic Low-Rank Tensor Bandits for Multi-Dimensional Online Decision Making

多维在线决策的随机低秩张量老虎机

Multi-dimensional online decision making plays a crucial role in many real applications such as online recommendation and digital marketing. In these problems, a decision at each time is a combination of choices from different types of entities. To solve it, we introduce stochastic low-rank tensor bandits, a class of bandits whose mean rewards can be represented as a low-rank tensor. We consider two settings, tensor bandits without context and tensor bandits with context. In…

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Statistical Inference of Cell-Type Proportions Estimated from Bulk Expression Data

混合表达数据中细胞类型比例估计的统计推断

There is a growing interest in cell-type-specific analysis from bulk samples with a mixture of different cell types. A critical first step in such analyses is the accurate estimation of cell-type proportions in a bulk sample. Although many methods have been proposed recently, quantifying the uncertainties associated with the estimated cell-type proportions has not been well studied. Lack of consideration of these uncertainties can lead to missed or false findings in…

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Estimating Cell-Type-Specific Gene Co-Expression Networks from Bulk Gene Expression Data with an Application to Alzheimer’s Disease

从整体基因表达数据估计细胞类型特异共表达网络

Inferring and characterizing gene co-expression networks has led to important insights on the molecular mechanisms of complex diseases. Most co-expression analyses to date have been performed on gene expression data collected from bulk tissues with different cell type compositions across samples. As a result, the co-expression estimates only offer an aggregated view of the underlying gene regulations and can be confounded by heterogeneity in cell type compositions, failing…

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Bias-Correction and Test for Mark-Point Dependence with Replicated Marked Point Processes

重复标记点过程中的标记与点依赖:偏差校正及检验

Mark-point dependence plays a critical role in research problems that can be fitted into the general framework of marked point processes. In this work, we focus on adjusting for mark-point dependence when estimating the mean and covariance functions of the mark process, given independent replicates of the marked point process. We assume that the mark process is a Gaussian process and the point process is a log-Gaussian Cox process, where the mark-point dependence is…

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Latent Network Structure Learning From High-Dimensional Multivariate Point Processes

高维多元点过程的潜在网络结构学习

Learning the latent network structure from large scale multivariate point process data is an important task in a wide range of scientific and business applications. For instance, we might wish to estimate the neuronal functional connectivity network based on spiking times recorded from a collection of neurons. To characterize the complex processes underlying the observed data, we propose a new and flexible class of nonstationary Hawkes processes that allow both excitatory…

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High-Dimensional Gaussian Graphical Regression Models with Covariates

含协变量的高维高斯图回归模型

Though Gaussian graphical models have been widely used in many scientific fields, relatively limited progress has been made to link graph structures to external covariates. We propose a Gaussian graphical regression model, which regresses both the mean and the precision matrix of a Gaussian graphical model on covariates. In the context of co-expression quantitative trait locus (QTL) studies, our method can determine how genetic variants and clinical conditions modulate the…

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Fast Network Community Detection With Profile-Pseudo Likelihood Methods

基于剖面伪似然的快速网络社区检测

The stochastic block model is one of the most studied network models for community detection, and fitting its likelihood function on large-scale networks is known to be challenging. One prominent work that overcomes this computational challenge is the fast pseudo-likelihood approach proposed by Amini et al. for fitting stochastic block models to large sparse networks. However, this approach does not have convergence guarantee, and may not be well suited for small and medium…

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Learning Human Activity Patterns Using Clustered Point Processes With Active and Inactive States

利用具有活跃与非活跃状态的聚集点过程学习人类活动模式

Modeling event patterns is a central task in a wide range of disciplines. In applications such as studying human activity patterns, events often arrive clustered with sporadic and long periods of inactivity. Such heterogeneity in event patterns poses challenges for existing point process models. In this article, we propose a new class of clustered point processes that alternate between active and inactive states. The proposed model is flexible, highly interpretable, and can…

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Partially Observed Dynamic Tensor Response Regression

部分观测动态张量响应回归

In modern data science, dynamic tensor data prevail in numerous applications. An important task is to characterize the relationship between dynamic tensor datasets and external covariates. However, the tensor data are often only partially observed, rendering many existing methods inapplicable. In this article, we develop a regression model with a partially observed dynamic tensor as the response and external covariates as the predictor. We introduce the low-rankness,…

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Using Maximum Entry-Wise Deviation to Test the Goodness of Fit for Stochastic Block Models

利用最大逐元素偏差检验随机区块模型的拟合优度

–The stochastic block model is widely used for detecting community structures in network data. How to test the goodness of fit of the model is one of the fundamental problems and has gained growing interests in recent years. In this article, we propose a novel goodness-of-fit test based on the maximum entry of the centered and rescaled adjacency matrix for the stochastic block model. One noticeable advantage of the proposed test is that the number of communities can be…

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Mixed-Effect Time-Varying Network Model and Application in Brain Connectivity Analysis

混合效应时变网络模型及其在脑连接分析中的应用

Time-varying networks are fast emerging in a wide range of scientific and business applications. Most existing dynamic network models are limited to a single-subject and discrete-time setting. In this article, we propose a mixed-effect network model that characterizes the continuous time-varying behavior of the network at the population level, meanwhile taking into account both the individual subject variability as well as the prior module information. We develop a multistep…

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Sampling for Conditional Inference on Network Data

网络数据条件推断的抽样方法

Random graphs with given vertex degrees have been widely used as a model for many real-world complex networks. However, both statistical inference and analytic study of such networks present great challenges. In this article, we propose a new sequential importance sampling method for sampling networks with a given degree sequence. These samples can be used to approximate closely the null distributions of a number of test statistics involved in such networks and provide an…

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