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Scalability of Metropolis-within-Gibbs schemes for high-dimensional Bayesian models

高维贝叶斯模型中 Metropolis-within-Gibbs 方案的可扩展性

Abstract We study general coordinate-wise Markov chain Monte Carlo schemes (such as Metropolis-within-Gibbs samplers), which are commonly used to fit Bayesian non-conjugate hierarchical models. We relate their convergence properties to the ones of the corresponding (potentially not implementable) random scan Gibbs sampler through the notion of conditional conductance. This allows us to study the performances of popular Metropolis-within-Gibbs schemes for non-conjugate…

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Conjugate Gradient Methods for High-Dimensional GLMMs

高维广义线性混合模型的共轭梯度方法

Generalized linear mixed models (GLMMs) are a widely used tool in statistical analysis. The main bottleneck of many computational approaches lies in the inversion of the high dimensional precision matrices associated with the random effects. Such matrices are typically sparse; however, the sparsity pattern resembles a multi partite random graph, which does not lend itself well to default sparse linear algebra techniques. Notably, we show that, for typical GLMMs, the Cholesky…

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Robust Leave-One-Out Cross-Validation for High-Dimensional Bayesian Models

高维贝叶斯模型的稳健留一交叉验证

Leave-one-out cross-validation (LOO-CV) is a popular method for estimating out-of-sample predictive accuracy. However, computing LOO-CV criteria can be computationally expensive due to the need to fit the model multiple times. In the Bayesian context, importance sampling provides a possible solution but classical approaches can easily produce estimators whose asymptotic variance is infinite, making them potentially unreliable. Here we propose and analyze a novel mixture…

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Dimension-free mixing times of Gibbs samplers for Bayesian hierarchical models

贝叶斯层级模型中 Gibbs 采样器的维度无关混合时间

Gibbs samplers are popular algorithms to approximate posterior distributions arising from Bayesian hierarchical models. Despite their popularity and good empirical performance, however, there are still relatively few quantitative results on their convergence properties, for example, much less than for gradient-based sampling methods. In this work, we analyse the behaviour of total variation mixing times of Gibbs samplers targeting hierarchical models using tools from…

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Optimal design of the Barker proposal and other locally balanced Metropolis–Hastings algorithms

Barker 提议与局部平衡 Metropolis–Hastings 算法的最优设计

Summary We study the class of first-order locally balanced Metropolis–Hastings algorithms introduced in Livingstone & Zanella (2022). To choose a specific algorithm within the class, the user must select a balancing function $g:{\mathbb{R}}_+ \to {\mathbb{R}}_+$ satisfying $g(t) = tg(1/t)$ and a noise distribution for the proposal increment. Popular choices within the class are the Metropolis-adjusted Langevin algorithm and the recently introduced Barker proposal. We first…

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Bayesian Conjugacy in Probit, Tobit, Multinomial Probit and Extensions: A Review and New Results

Probit、Tobit、多项 Probit 及扩展模型的贝叶斯共轭性:综述与新结果

A broad class of models that routinely appear in several fields can be expressed as partially or fully discretized Gaussian linear regressions. Besides including classical Gaussian response settings, this class also encompasses probit, multinomial probit and tobit regression, among others, thereby yielding one of the most widely-implemented families of models in routine applications. The relevance of such representations has stimulated decades of research in the Bayesian…

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Scalable and accurate variational Bayes for high-dimensional binary regression models

高维二元回归中可扩展且准确的变分贝叶斯方法

Summary Modern methods for Bayesian regression beyond the Gaussian response setting are often computationally impractical or inaccurate in high dimensions. In fact, as discussed in recent literature, bypassing such a trade-off is still an open problem even in routine binary regression models, and there is limited theory on the quality of variational approximations in high-dimensional settings. To address this gap, we study the approximation accuracy of routinely used…

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Random Partition Models for Microclustering Tasks

用于微聚类任务的随机划分模型

Traditional Bayesian random partition models assume that the size of each cluster grows linearly with the number of data points. While this is appealing for some applications, this assumption is not appropriate for other tasks such as entity resolution (ER), modeling of sparse networks, and DNA sequencing tasks. Such applications require models that yield clusters whose sizes grow sublinearly with the total number of data points—the microclustering property. Motivated by…

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The Barker Proposal: Combining Robustness and Efficiency in Gradient-Based MCMC

Barker 提议:结合梯度 MCMC 的稳健性与效率

Abstract There is a tension between robustness and efficiency when designing Markov chain Monte Carlo (MCMC) sampling algorithms. Here we focus on robustness with respect to tuning parameters, showing that more sophisticated algorithms tend to be more sensitive to the choice of step-size parameter and less robust to heterogeneity of the distribution of interest. We characterise this phenomenon by studying the behaviour of spectral gaps as an increasingly poor step-size is…

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Informed Proposals for Local MCMC in Discrete Spaces

离散空间局部 MCMC 的信息化提议分布

There is a lack of methodological results to design efficient Markov chain Monte Carlo ( MCMC) algorithms for statistical models with discrete-valued high-dimensional parameters. Motivated by this consideration, we propose a simple framework for the design of informed MCMC proposals (i.e., Metropolis–Hastings proposal distributions that appropriately incorporate local information about the target) which is naturally applicable to discrete spaces. Using Peskun-type…

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Scalable Importance Tempering and Bayesian Variable Selection

可扩展的重要性调温与贝叶斯变量选择

Summary We propose a Monte Carlo algorithm to sample from high dimensional probability distributions that combines Markov chain Monte Carlo and importance sampling. We provide a careful theoretical analysis, including guarantees on robustness to high dimensionality, explicit comparison with standard Markov chain Monte Carlo methods and illustrations of the potential improvements in efficiency. Simple and concrete intuition is provided for when the novel scheme is expected to…

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