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Tensor decompositions and sparse log-linear models

张量分解与稀疏对数线性模型

Contingency table analysis routinely relies on log-linear models, with latent structure analysis providing a common alternative. Latent structure models lead to a reduced rank tensor factorization of the probability mass function for multivariate categorical data, while log-linear models achieve dimensionality reduction through sparsity. Little is known about the relationship between these notions of dimensionality reduction in the two paradigms. We derive several results…

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Bayesian inference on quasi-sparse count data

准稀疏计数数据的贝叶斯推断

There is growing interest in analysing high-dimensional count data, which often exhibit quasi-sparsity corresponding to an overabundance of zeros and small nonzero counts. Existing methods for analysing multivariate count data via Poisson or negative binomial log-linear hierarchical models with zero-inflation cannot flexibly adapt to quasi-sparse settings. We develop a new class of continuous local-global shrinkage priors tailored to quasi-sparse counts. Theoretical…

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Bayesian Nonparametric Modeling of Higher Order Markov Chains

高阶马尔可夫链的贝叶斯非参数建模

We consider the problem of flexible modeling of higher order Markov chains when an upper bound on the order of the chain is known but the true order and nature of the serial dependence are unknown. We propose Bayesian nonparametric methodology based on conditional tensor factorizations, which can characterize any transition probability with a specified maximal order. The methodology selects the important lags and captures higher order interactions among the lags, while also…

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Data augmentation for models based on rejection sampling

基于拒绝采样的模型的数据增广

We present a data augmentation scheme to perform Markov chain Monte Carlo inference for models where data generation involves a rejection sampling algorithm. Our idea is a simple scheme to instantiate the rejected proposals preceding each data point. The resulting joint probability over observed and rejected variables can be much simpler than the marginal distribution over the observed variables, which often involves intractable integrals. We consider three problems:…

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Bayesian Conditional Tensor Factorizations for High-Dimensional Classification

用于高维分类的贝叶斯条件张量分解

In many application areas, data are collected on a categorical response and high-dimensional categorical predictors, with the goals being to build a parsimonious model for classification while doing inferences on the important predictors. In settings such as genomics, there can be complex interactions among the predictors. By using a carefully-structured Tucker factorization, we define a model that can characterize any conditional probability, while facilitating variable…

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Bayesian manifold regression

贝叶斯流形回归

There is increasing interest in the problem of nonparametric regression with high-dimensional predictors. When the number of predictors $D$ is large, one encounters a daunting problem in attempting to estimate a $D$-dimensional surface based on limited data. Fortunately, in many applications, the support of the data is concentrated on a $d$-dimensional subspace with $d\ll D$. Manifold learning attempts to estimate this subspace. Our focus is on developing computationally…

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Nonparametric Bayes inference on conditional independence

条件独立性的非参数贝叶斯推断

In many application areas, a primary focus is on assessing evidence in the data refuting the assumption of independence of |$Y$| and |$X$| conditionally on |$Z$|⁠, with |$Y$| response variables, |$X$| predictors of interest, and |$Z$| covariates. Ideally, one would have methods available that avoid parametric assumptions, allow |$Y, X, Z$| to be random variables on arbitrary spaces with arbitrary dimension, and accommodate rapid consideration of different candidate…

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Shared kernel Bayesian screening

共享核贝叶斯筛选

This article concerns testing for equality of distribution between groups. We focus on screening variables with shared distributional features such as common support, modes and patterns of skewness. We propose a Bayesian testing method using kernel mixtures, which improves performance by borrowing information across the different variables and groups through shared kernels and a common probability of group differences. The inclusion of shared kernels in a finite mixture,…

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Bayesian Factorizations of Big Sparse Tensors

大型稀疏张量的贝叶斯分解

It has become routine to collect data that are structured as multiway arrays (tensors). There is an enormous literature on low rank and sparse matrix factorizations, but limited consideration of extensions to the tensor case in statistics. The most common low rank tensor factorization relies on parallel factor analysis (PARAFAC), which expresses a rank k tensor as a sum of rank one tensors. When observations are only available for a tiny subset of the cells of a big tensor,…

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Bayesian Compressed Regression

贝叶斯压缩回归

As an alternative to variable selection or shrinkage in high-dimensional regression, we propose to randomly compress the predictors prior to analysis. This dramatically reduces storage and computational bottlenecks, performing well when the predictors can be projected to a low-dimensional linear subspace with minimal loss of information about the response. As opposed to existing Bayesian dimensionality reduction approaches, the exact posterior distribution conditional on the…

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Dirichlet–Laplace Priors for Optimal Shrinkage

用于最优收缩的 Dirichlet–Laplace 先验

regularization, are routinely used in high-dimensional applications, and there is a rich literature on optimality properties under sparsity assumptions. In the Bayesian paradigm, sparsity is routinely induced through two-component mixture priors having a probability mass at zero, but such priors encounter daunting computational problems in high dimensions. This has motivated continuous shrinkage priors, which can be expressed as global-local scale mixtures of Gaussians,…

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Marginally Specified Priors for Non-Parametric Bayesian Estimation

非参数贝叶斯估计中的边际指定先验

Summary Prior specification for non-parametric Bayesian inference involves the difficult task of quantifying prior knowledge about a parameter of high, often infinite, dimension. A statistician is unlikely to have informed opinions about all aspects of such a parameter but will have real information about functionals of the parameter, such as the population mean or variance. The paper proposes a new framework for non-parametric Bayes inference in which the prior distribution…

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Bayesian Multiscale Modeling of Closed Curves in Point Clouds

点云中闭合曲线的贝叶斯多尺度建模

Modeling object boundaries based on image or point cloud data is frequently necessary in medical and scientific applications ranging from detecting tumor contours for targeted radiation therapy, to the classification of organisms based on their structural information. In low-contrast images or sparse and noisy point clouds, there is often insufficient data to recover local segments of the boundary in isolation. Thus, it becomes critical to model the entire boundary in the…

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Mechanistic Hierarchical Gaussian Processes

融合机理信息的层级高斯过程

The statistics literature on functional data analysis focuses primarily on flexible black-box approaches, which are designed to allow individual curves to have essentially any shape while characterizing variability. Such methods typically cannot incorporate mechanistic information, which is commonly expressed in terms of differential equations. Motivated by studies of muscle activation, we propose a nonparametric Bayesian approach that takes into account mechanistic…

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Enriched Stick-Breaking Processes for Functional Data

函数数据的富集折棒过程

In many applications involving functional data, prior information is available about the proportion of curves having different attributes. It is not straightforward to include such information in existing procedures for functional data analysis. Generalizing the functional Dirichlet process (FDP), we propose a class of stick-breaking priors for distributions of functions. These priors incorporate functional atoms drawn from constrained stochastic processes. The…

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Bayes Variable Selection in Semiparametric Linear Models

半参数线性模型中的贝叶斯变量选择

There is a rich literature on Bayesian variable selection for parametric models. Our focus is on generalizing methods and asymptotic theory established for mixtures of g-priors to semiparametric linear regression models having unknown residual densities. Using a Dirichlet process location mixture for the residual density, we propose a semiparametric g-prior which incorporates an unknown matrix of cluster allocation indicators. For this class of priors, posterior computation…

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Locally Adaptive Bayes Nonparametric Regression via Nested Gaussian Processes

通过嵌套高斯过程实现局部自适应贝叶斯非参数回归

We propose a nested Gaussian process (nGP) as a locally adaptive prior for Bayesian nonparametric regression. Specified through a set of stochastic differential equations (SDEs), the nGP imposes a Gaussian process prior for the function’s mth-order derivative. The nesting comes in through including a local instantaneous mean function, which is drawn from another Gaussian process inducing adaptivity to locally varying smoothness. We discuss the support of the nGP prior in…

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Bayesian Modeling of Temporal Dependence in Large Sparse Contingency Tables

大型稀疏列联表时间依赖的贝叶斯建模

In many applications, it is of interest to study trends over time in relationships among categorical variables, such as age group, ethnicity, religious affiliation, political party and preference for particular policies. At each time point, a sample of individuals provide responses to a set of questions, with different individuals sampled at each time. In such settings, there tends to be abundant missing data and the variables being measured may change over time. At each…

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Bayesian Gaussian Copula Factor Models for Mixed Data

混合数据的贝叶斯高斯 Copula 因子模型

Gaussian factor models have proven widely useful for parsimoniously characterizing dependence in multivariate data. There is a rich literature on their extension to mixed categorical and continuous variables, using latent Gaussian variables or through generalized latent trait models acommodating measurements in the exponential family. However, when generalizing to non-Gaussian measured variables the latent variables typically influence both the dependence structure and the…

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Simplex Factor Models for Multivariate Unordered Categorical Data

多元无序分类数据的单纯形因子模型

Gaussian latent factor models are routinely used for modeling of dependence in continuous, binary, and ordered categorical data. For unordered categorical variables, Gaussian latent factor models lead to challenging computation and complex modeling structures. As an alternative, we propose a novel class of simplex factor models. In the single-factor case, the model treats the different categorical outcomes as independent with unknown marginals. The model can characterize…

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Bayesian Kernel Mixtures for Counts

计数数据的贝叶斯核混合模型

Although Bayesian nonparametric mixture models for continuous data are well developed, there is a limited literature on related approaches for count data. A common strategy is to use a mixture of Poissons, which unfortunately is quite restrictive in not accounting for distributions having variance less than the mean. Other approaches include mixing multinomials, which requires finite support, and using a Dirichlet process prior with a Poisson base measure, which does not…

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Nonparametric Bayes Stochastically Ordered Latent Class Models

具有随机序约束的非参数贝叶斯潜在类别模型

Latent class models (LCMs) are used increasingly for addressing a broad variety of problems, including sparse modeling of multivariate and longitudinal data, model-based clustering, and flexible inferences on predictor effects. Typical frequentist LCMs require estimation of a single finite number of classes, which does not increase with the sample size, and have a well-known sensitivity to parametric assumptions on the distributions within a class. Bayesian nonparametric…

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Bayesian Spatial Quantile Regression

贝叶斯空间分位数回归

Tropospheric ozone is one of the six criteria pollutants regulated by the United States Environmental Protection Agency under the Clean Air Act and has been linked with several adverse health effects, including mortality. Due to the strong dependence on weather conditions, ozone may be sensitive to climate change and there is great interest in studying the potential effect of climate change on ozone, and how this change may affect public health. In this paper we develop a…

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Latent Stick-Breaking Processes

潜在断棒过程

We develop a model for stochastic processes with random marginal distributions. Our model relies on a stick-breaking construction for the marginal distribution of the process, and introduces dependence across locations by using a latent Gaussian copula model as the mechanism for selecting the atoms. The resulting latent stick-breaking process (LaSBP) induces a random partition of the index space, with points closer in space having a higher probability of being in the same…

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