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Nonparametric Predictive Inference for Discrete Data via Metropolis-Adjusted Dirichlet Sequences

基于 Metropolis 调整狄利克雷序列的离散数据非参数预测推断

This article is motivated by challenges in conducting Bayesian inferences on unknown discrete distributions, with a particular focus on count data. To avoid the computational disadvantages of traditional mixture models, we develop a novel Bayesian predictive approach. In particular, our Metropolis-adjusted Dirichlet (mad) sequence model characterizes the predictive measure as a mixture of a base measure and Metropolis-Hastings kernels centered on previous data points. The…

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Scalable and Robust Regression Models for Continuous Proportional Data

连续比例数据的可扩展稳健回归模型

Beta regression is used routinely for continuous proportional data, but it often encounters practical issues such as a lack of robustness to misspecification of the beta distribution and sensitivity to outliers. We develop an improved class of generalized linear models starting with the continuous binomial (cobin) distribution and further extending to dispersion mixtures of cobin distributions (micobin). The proposed cobin regression and micobin regression models have…

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Robustifying Likelihoods by Optimistically Re-weighting Data

通过乐观数据重加权增强似然稳健性

Likelihood-based inferences have been remarkably successful in wide-spanning application areas. However, even after due diligence in selecting a good model for the data at hand, there is inevitably some amount of model misspecification: outliers, data contamination or inappropriate parametric assumptions such as Gaussianity mean that most models are at best rough approximations of reality. A significant practical concern is that for certain inferences, even small amounts of…

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Bayesian Clustering via Fusing of Localized Densities

通过融合局部密度进行贝叶斯聚类

Bayesian clustering typically relies on mixture models, with each component interpreted as a different cluster. After defining a prior for the component parameters and weights, Markov chain Monte Carlo (MCMC) algorithms are commonly used to produce samples from the posterior distribution of the component labels. The data are then clustered by minimizing the expectation of a clustering loss function that favors similarity to the component labels. Unfortunately, although these…

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Inferring Covariance Structure from Multiple Data Sources via Subspace Factor Analysis

通过子空间因子分析推断多来源数据的协方差结构

Factor analysis provides a canonical framework for imposing lower-dimensional structure such as sparse covariance in high-dimensional data. High-dimensional data on the same set of variables are often collected under different conditions, for instance in reproducing studies across research groups. In such cases, it is natural to seek to learn the shared versus condition-specific structure. Existing hierarchical extensions of factor analysis have been proposed, but face…

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Modeling Recurrent Failures on Large Directed Networks

大型有向网络上的重复故障建模

Many lifeline infrastructure systems consist of thousands of components configured in a complex directed network. Disruption of the infrastructure constitutes a recurrent failure process over a directed network. Statistical inference for such network recurrence data is challenging because of the large number of nodes with irregular connections among them. Motivated by 16 years of Scottish Water operation records, we propose a network Gamma-Poisson Autoregressive NHPP (GPAN)…

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Bayesian Inference on High-Dimensional Multivariate Binary Responses

高维多变量二元响应的贝叶斯推断

It has become increasingly common to collect high-dimensional binary response data; for example, with the emergence of new sampling techniques in ecology. In smaller dimensions, multivariate probit (MVP) models are routinely used for inferences. However, algorithms for fitting such models face issues in scaling up to high dimensions due to the intractability of the likelihood, involving an integral over a multivariate normal distribution having no analytic form. Although a…

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Covariate-Informed Latent Interaction Models: Addressing Geographic & Taxonomic Bias in Predicting Bird–Plant Interactions

协变量引导的潜在交互模型:校正鸟类与植物互动预测的地理及分类偏差

Reductions in natural habitats urge that we better understand species’ interconnection and how biological communities respond to environmental changes. However, ecological studies of species’ interactions are limited by their geographic and taxonomic focus which can distort our understanding of interaction dynamics. We focus on bird–plant interactions that refer to situations of potential fruit consumption and seed dispersal. We develop an approach for predicting species’…

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Bayesian Modeling of Sequential Discoveries

序贯新发现的贝叶斯建模

We aim at modeling the appearance of distinct tags in a sequence of labeled objects. Common examples of this type of data include words in a corpus or distinct species in a sample. These sequential discoveries are often summarized via accumulation curves, which count the number of distinct entities observed in an increasingly large set of objects. We propose a novel Bayesian method for species sampling modeling by directly specifying the probability of a new discovery,…

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Classification Trees for Imbalanced Data: Surface-to-Volume Regularization

不平衡数据的分类树:表面积与体积比正则化

Classification algorithms face difficulties when one or more classes have limited training data. We are particularly interested in classification trees, due to their interpretability and flexibility. When data are limited in one or more of the classes, the estimated decision boundaries are often irregularly shaped due to the limited sample size, leading to poor generalization error. We propose a novel approach that penalizes the Surface-to-Volume Ratio (SVR) of the decision…

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Efficient Manifold Approximation with Spherelets

利用局部球面高效逼近流形

Abstract In statistical dimensionality reduction, it is common to rely on the assumption that high dimensional data tend to concentrate near a lower dimensional manifold. There is a rich literature on approximating the unknown manifold, and on exploiting such approximations in clustering, data compression, and prediction. Most of the literature relies on linear or locally linear approximations. In this article, we propose a simple and general alternative, which instead uses…

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Bayesian Factor Analysis for Inference on Interactions

用于交互作用推断的贝叶斯因子分析

This article is motivated by the problem of inference on interactions among chemical exposures impacting human health outcomes. Chemicals often co-occur in the environment or in synthetic mixtures and as a result exposure levels can be highly correlated. We propose a latent factor joint model, which includes shared factors in both the predictor and response components while assuming conditional independence. By including a quadratic regression in the latent variables in the…

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Estimating Densities with Non-Linear Support by Using Fisher–Gaussian Kernels

利用 Fisher–Gaussian 核估计具有非线性支撑的密度

Summary Current tools for multivariate density estimation struggle when the density is concentrated near a non-linear subspace or manifold. Most approaches require the choice of a kernel, with the multivariate Gaussian kernel by far the most commonly used. Although heavy-tailed and skewed extensions have been proposed, such kernels cannot capture curvature in the support of the data. This leads to poor performance unless the sample size is very large relative to the…

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Targeted Random Projection for Prediction From High-Dimensional Features

面向高维特征预测的定向随机投影

Minerva Mukhopadhyaya & David B. Dunsonb Department of Mathematics and Statistics, Indian Institute of Technology, Kanpur, India Department of Statistical Science, Duke University, Durham, NC Color versions of one or more of the figures in the article can be found online at www.tandfonline.com/r/JASA. Supplementary materials for this article are available online. Please go to www.tandfonline.com/r/JASA. CONTACT Minerva Mukhopadhyay minervam@iitk.ac.in Department of…

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Comparing and Weighting Imperfect Models Using D-Probabilities

用 D 概率比较和加权不完美模型

), relying on evaluating parametric models relative to a nonparametric Bayesian reference using Kullback-Leibler divergence. D-probabilities are useful in goodness-of-fit assessments, in comparing imperfect models, and in providing model weights to be used in model aggregation. D-probabilities avoid some of the disadvantages of Bayesian model probabilities, such as large sensitivity to prior choice, and tend to place higher weight on a greater diversity of models. In an…

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Nonparametric Bayes Models of Fiber Curves Connecting Brain Regions

连接脑区的纤维曲线的非参数贝叶斯模型

In studying structural inter-connections in the human brain, it is common to first estimate fiber bundles connecting different regions relying on diffusion MRI. These fiber bundles act as highways for neural activity. Current statistical methods reduce the rich information into an adjacency matrix, with the elements containing a count of fibers or a mean diffusion feature along the fibers. The goal of this article is to avoid discarding the rich geometric information of…

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MCMC for Imbalanced Categorical Data

不平衡类别数据的MCMC计算

Many modern applications collect highly imbalanced categorical data, with some categories relatively rare. Bayesian hierarchical models combat data sparsity by borrowing information, while also quantifying uncertainty. However, posterior computation presents a fundamental barrier to routine use; a single class of algorithms does not work well in all settings and practitioners waste time trying different types of Markov chain Monte Carlo (MCMC) approaches. This article was…

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Robust Bayesian Inference via Coarsening

通过粗化实现稳健贝叶斯推断

The standard approach to Bayesian inference is based on the assumption that the distribution of the data belongs to the chosen model class. However, even a small violation of this assumption can have a large impact on the outcome of a Bayesian procedure. We introduce a novel approach to Bayesian inference that improves robustness to small departures from the model: rather than conditioning on the event that the observed data are generated by the model, one conditions on the…

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Fast Moment Estimation for Generalized Latent Dirichlet Models

广义潜在 Dirichlet 模型的快速矩估计

We develop a generalized method of moments (GMM) approach for fast parameter estimation in a new class of Dirichlet latent variable models with mixed data types. Parameter estimation via GMM has computational and statistical advantages over alternative methods, such as expectation maximization, variational inference, and Markov chain Monte Carlo. A key computational advantage of our method, Moment Estimation for latent Dirichlet models (MELD), is that parameter estimation…

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Bayesian Semiparametric Mixed Effects Markov Models With Application to Vocalization Syntax

贝叶斯半参数混合效应马尔可夫模型及发声语法应用

Studying the neurological, genetic, and evolutionary basis of human vocal communication mechanisms using animal vocalization models is an important field of neuroscience. The datasets typically comprise structured sequences of syllables or “songs” produced by animals from different genotypes under different social contexts. It has been difficult to come up with sophisticated statistical methods that appropriately model animal vocal communication syntax. We address this need…

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Nonparametric Bayes Modeling of Populations of Networks

网络总体的贝叶斯非参数建模

Replicated network data are increasingly available in many research fields. For example, in connectomic applications, interconnections among brain regions are collected for each patient under study, motivating statistical models which can flexibly characterize the probabilistic generative mechanism underlying these network-valued data. Available models for a single network are not designed specifically for inference on the entire probability mass function of a network-valued…

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Simple, scalable and accurate posterior interval estimation

简单、可扩展且准确的后验区间估计

Summary Standard posterior sampling algorithms, such as Markov chain Monte Carlo procedures, face major challenges in scaling up to massive datasets. We propose a simple and general posterior interval estimation algorithm to rapidly and accurately estimate quantiles of the posterior distributions for one-dimensional functionals. Our algorithm runs Markov chain Monte Carlo in parallel for subsets of the data, and then averages quantiles estimated from each subset. We provide…

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Expandable factor analysis

可扩展因子分析

Bayesian sparse factor models have proven useful for characterizing dependence in multivariate data, but scaling computation to large numbers of samples and dimensions is problematic. We propose expandable factor analysis for scalable inference in factor models when the number of factors is unknown. The method relies on a continuous shrinkage prior for efficient maximum a posteriori estimation of a low-rank and sparse loadings matrix. The structure of the prior leads to an…

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Extrinsic Local Regression on Manifold-Valued Data

流形值数据的外在局部回归

We propose an extrinsic regression framework for modeling data with manifold valued responses and Euclidean predictors. Regression with manifold responses has wide applications in shape analysis, neuroscience, medical imaging and many other areas. Our approach embeds the manifold where the responses lie onto a higher dimensional Euclidean space, obtains a local regression estimate in that space, and then projects this estimate back onto the image of the manifold. Outside the…

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