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Dynamic Co-Expression Network Estimation via Multivariate Mixed-Effects Models

基于多元混合效应模型的动态共表达网络估计

High-throughput sequencing technologies have enabled the collection of large-scale longitudinal -omics data, providing new opportunities for studying co-expression networks among molecular nodes such as genes and proteins. However, the high dimensionality and temporal dependence inherent in such data require specialized statistical methods. We propose a novel approach to infer dynamic co-expression networks among features over time (DCENt), where each node (feature) is…

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Shrinkage-Constrained Functional Calibration for Complex Computer Models

面向复杂计算机模型的收缩约束函数标定

We propose a new Bayesian model calibration formalism as an alternative to the Kennedy O'Hagan (KOH) framework which we term integrated bias with full uncertainty (IBFU). In KOH, calibration parameters are modeled as fixed, but unknown distributions with relatively weak prior constraints, and their posteriors are inferred jointly with an additive discrepancy Gaussian Process (GP). This formulation often provides limited regularization and leads to confounding pathologies…

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High-Dimensional Data with Measurement Error

高维数据中的测量误差:惩罚回归方法综述与比较

In many important statistical analyses, the number of covariates $p$ often exceeds the data size $n$, a regime commonly referred to as high-dimensional. While considerable progress has been made in high-dimensional regression under the assumption of error-free covariates, real-world data frequently involve noisy or corrupted measurements. When left unaddressed, measurement errors can silently distort the analysis and mislead the conclusions. This paper reviews and evaluates…

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Semiparametric Inference for Causal Effects on Functional Outcomes

函数型结局因果效应的半参数推断

Difference-in-differences (DiD) is a cornerstone of causal inference, yet extending it to functional outcomes is not a routine scalar generalization; rather, it entails three fundamental challenges in identification, inference, and observation. This paper develops a comprehensive semiparametric inference framework for functional DiD with discretely observed data. First, we define the functional average treatment effect under parallel trends and derive its efficient influence…

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rd2d: Causal Inference in Boundary Discontinuity Designs

rd2d:边界断点设计中的因果推断软件

Boundary Discontinuity (BD) designs are used in empirical research to learn about causal treatment effects along a continuous assignment boundary defined by a bivariate score. These designs are also known as multi-score regression discontinuity (RD) designs, and include geographic RD designs as a prominent example. This article introduces \pkg{rd2d}, a statistical software package for \proglang{R}, \proglang{Python}, and \proglang{Stata} that implements local polynomial…

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Hierarchical forecasting: The role of information

层级预测中信息的作用

In hierarchical forecasting, the process of forecast reconciliation transforms a set of "base" or "raw" forecasts, which do not satisfy the hierarchical aggregation constraints in the real data, into a set of "coherent" forecasts, which do satisfy those constraints. The academic literature provides ample simulation evidence and real-world examples demonstrating the value of forecast reconciliation in improving forecasts of hierarchical time series. This improvement is…

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Bridging Maximum Likelihood and Optimal Transport for Efficient Inference and Model Selection in Stochastic Block Models

连接最大似然与最优传输:随机块模型的高效推断与模型选择

We study inference in stochastic block models (SBMs) through the lens of optimal transport (OT). We first establish that maximum likelihood variational inference (MLVI) can be interpreted as a semi-relaxed Gromov-Wasserstein (srGW) projection with entropic regularization. While this formulation yields accurate clustering, the entropic regularization prevents transport plans to be sparse, hindering intrinsic model selection. Consequently, we investigate unregularized srGW…

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Estimating Continuous Treatment Effects with Two-Stage Kernel Ridge Regression

利用两阶段核岭回归估计连续处理效应

We study the problem of estimating the effect function for a continuous treatment, which maps each treatment value to a population-averaged outcome. A central challenge in this setting is confounding: treatment assignment often depends on covariates, creating selection bias that makes direct regression of the response on treatment unreliable. To address this issue, we propose a two-stage kernel ridge regression method. In the first stage, we learn a model for the response as…

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Riemannian AmbientFlow: Towards Simultaneous Manifold Learning and Generative Modeling from Corrupted Data

黎曼环境流:从受损数据中同时学习流形与生成模型

Modern generative modeling methods have demonstrated strong performance in learning complex data distributions from clean samples. In many scientific and imaging applications, however, clean samples are unavailable, and only noisy or linearly corrupted measurements can be observed. Moreover, latent structures, such as manifold geometries, present in the data are important to extract for further downstream scientific analysis. In this work, we introduce Riemannian…

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Automated, efficient and model-free inference for randomized clinical trials via data-driven covariate adjustment

通过数据驱动协变量调整实现随机临床试验的自动化高效无模型推断

In 2023, the U.S. Food and Drug Administration issued guidance for adjustment of covariates in randomized clinical trials, emphasizing its role in enhancing precision and power through prognostic baseline variables. Despite its potential, many trials underutilize this method partly due to challenges in pre-specifying optimal baseline covariates and their functional forms. We explore the potential of automated, data-adaptive methods-including stepwise regression, Lasso and…

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Robust Moment-Based Estimation via Spectral Gradient Reweighting

基于谱梯度重加权的稳健矩估计

Moment-based estimation is a theoretically attractive approach to parametric inference, especially when likelihood-based estimation is unavailable, misspecified, or computationally inconvenient. However, the moment equations involve sample averages, which makes moment-based estimation sensitive to outliers. We propose the SGR-GMM algorithm, a robust generalized method of moments (GMM) procedure that uses a spectral gradient reweighting (SGR) primitive to soft-reweight the…

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A Simple Measure of Robustness for External Validity under Covariate Shifts

协变量分布偏移下外部有效性的简明稳健性度量

This paper studies the robustness of estimated policy effects to changes in the distribution of covariates, a key determinant of the external validity of (quasi)-experimental results. I propose a novel robustness metric $δ^*$ which measures the smallest covariate shift needed to invalidate an empirical claim about the policy effect (e.g., $ATE > 0$). I estimate $δ^*$ via de-biased GMM, achieving a parametric rate of convergence while accommodating machine-learning estimators…

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Learning Nonlinear Factor Models with Unknown Monotone Links from Incomplete and Noisy Data

从不完整含噪数据学习未知单调链接的非线性因子模型

We study a nonlinear factor model in which observed responses depend on low-rank latent factors through an unknown monotone link function. This setting is challenging and largely underexplored due to severe nonconvexity and identifiability issues. The link function is assumed to lie in a reproducing kernel Hilbert space (RKHS), enabling flexible nonparametric modeling while preserving identifiability. We formulate the problem as the joint recovery of the low-rank factors,…

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Preserving linear invariants in ensemble filtering methods

集合滤波方法中的线性不变量保持

Data assimilation combines dynamical models with observations to improve state estimates. Ensemble filters sequentially assimilate observations by updating a set of samples over time, alternating between a forecast and an analysis step. Accurate and robust predictions often require preserving critical invariants such as mass, stoichiometric balance of chemical species, and electrical charge. While modern numerical solvers maintain these invariants, existing…

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Bayesian High-dimensional Grouped-regression using Sparse Projection-posterior

基于稀疏投影后验的贝叶斯高维分组回归

We present a novel Bayesian approach for high-dimensional grouped regression under sparsity. We leverage a sparse projection method that uses a sparsity-inducing map to derive an induced posterior on a lower-dimensional parameter space. Our method introduces three distinct projection maps based on popular penalty functions: the Group LASSO Projection Posterior, Group SCAD Projection Posterior, and Adaptive Group LASSO Projection Posterior. Each projection map is constructed…

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Causal inference via implied interventions

通过隐含干预进行因果推断

In the context of having an instrumental variable, the standard practice in causal inference begins by targeting an effect of interest and proceeds by formulating assumptions enabling its identification. We turn this around by adhering to the interventions the observational distribution allows to identify, rather than starting with a desired causal estimand and imposing untestable conditions. The randomization of an instrument and its exclusion restriction define a class of…

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LLM Sparsity Prior for Robust Feature Selection

面向稳健特征选择的大语言模型稀疏先验

Large language models (LLMs) offer a scalable mechanism to elicit domain-informed prior information for high-dimensional variable selection. However, existing methods such as LLM-Lasso are sensitive to weight quality, with performance degrading substantially when LLM-generated weights are inaccurate. To address this challenge, we first introduce a framework for quantifying the quality of LLM-generated weights, enabling rigorous evaluation of LLM-informed methods across…

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Multidimensional constructs and moderated linear and nonlinear factor analysis

多维构念与调节线性及非线性因子分析

Multidimensional factor models with moderations on all model parameters have so far been limited to single-factor and two-factor models. This does not align well with existing psychological measures, which are commonly intended to assess 3-5 dimensions of a latent construct. In this paper, I introduce a multidimensional MNLFA model that permits the moderation of item intercepts, loadings, residual variances, factor means, variances, and correlations across three or more…

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Substantive-Model-Compatible Multiple Imputation for Cox Regression with a Diverging Number of Covariates

发散维协变量下Cox回归的实质模型相容多重插补

Modern biomedical survival studies with high-dimensional genomic and clinical predictors are challenged by missing covariates. Existing methods conduct inference through penalization and debiasing when the number of covariates diverges with sample size, but they are typically developed with fully observed covariates. Conversely, substantive-model-compatible multiple imputation methods, particularly substantive-model-compatible fully conditional specification (SMC-FCS),…

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Linear Functional Testing with General Loadings in Sparse Regression: Separation Rates and Computational Barriers

稀疏回归中一般载荷的线性泛函检验:分离率与计算障碍

We study the problem of testing $H_0: ξ^\topβ=t_0$ in high-dimensional sparse linear regression with Gaussian random design and unknown design covariance. The loading vector $ξ$ is arbitrary, and the exact sparsity level $k$ is unknown but bounded by a known value $k_u$. Tests are required to control Type I error uniformly over the $k_u$-sparse null, while power is evaluated against $k$-sparse alternatives. We construct a computationally efficient mixed test that gives an…

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Group-Aware Matrix Estimation and Latent Subspace Recovery

群体感知矩阵估计与潜在子空间恢复

Modern matrix completion problems often involve heterogeneous data whose rows simultaneously belong to many meta-categories, such as demographic and age groups in recommendation systems, or region and recording session labels in neural electrophysiological experiments. Standard low-rank estimators impose a single global latent geometry, which can recover average structure but may smooth away subgroup-specific variation, especially when observations are unevenly distributed…

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A Practical Guide to Estimating Conditional Marginal Effects: Modern Approaches

条件边际效应估计的实用指南:现代方法

This Element offers a practical guide to estimating conditional marginal effects-how treatment effects vary with a moderating variable-using modern statistical methods. Commonly used approaches, such as linear interaction models, often suffer from unclarified estimands, limited overlap, and restrictive functional forms. This guide begins by clearly defining the estimand and presenting the main identification results. It then reviews and improves upon existing solutions, such…

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High-dimensional analysis of ridge regression for non-identically distributed data with a variance profile

方差轮廓下非独立同分布数据岭回归的高维分析

High-dimensional linear regression has been thoroughly studied in the context of independent and identically distributed data. We propose to investigate high-dimensional regression models for independent but non-identically distributed data. To this end, we suppose that the set of observed predictors (or features) is a random matrix with a variance profile and with dimensions growing at a proportional rate. Assuming a random effect model, we study the predictive risk of the…

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Fast Spawn\&Prune (FS\&P): Global convergence of stochastic conic particle gradient descent via birth/death process

Fast Spawn&Prune:随机锥粒子梯度下降的全局收敛

We investigate the global optimization of the objective function arising in continuous sparse regression, specifically the Beurling LASSO (BLASSO), over the space of measures. While Conic Particle Gradient Descent (CPGD) methods are computationally efficient, they may become trapped in local minima due to the non-convexity of the parameterization. To overcome this limitation, we introduce Fast Spawn\&Prune (FS\&P), a stochastic algorithm that extends FastPart introduced in…

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