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Counterfactual Generative Modeling with Variational Causal Inference

基于变分因果推断的反事实生成建模

Estimating an individual's counterfactual outcomes under interventions is a challenging task for traditional causal inference and supervised learning approaches when the outcome is high-dimensional (e.g. gene expressions, facial images) and covariates are relatively limited. In this case, to predict one's outcomes under counterfactual treatments, it is crucial to leverage individual information contained in the observed outcome in addition to the covariates. Prior works…

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Regularized Parameter Estimation in Mixed Model Trace Regression

混合模型迹回归中的正则化参数估计

We introduce mixed model trace regression (MMTR), a mixed model linear regression extension for scalar responses and high-dimensional matrix-valued covariates. MMTR's fixed effects component is equivalent to trace regression, with an element-wise lasso penalty imposed on the regression coefficients matrix to facilitate the estimation of a sparse mean parameter. MMTR's key innovation lies in modeling the covariance structure of matrix-variate random effects as a Kronecker…

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Minnesota BART

Minnesota BART:面向宏观预测的稀疏与滞后收缩树先验

Vector autoregression (VAR) models are widely used for forecasting and macroeconomic analysis, yet they remain limited by their reliance on a linear parameterization. Recent research has introduced nonparametric alternatives, such as Bayesian additive regression trees (BART), which provide flexibility without strong parametric assumptions. However, existing BART-based frameworks do not account for time dependency or allow for sparse estimation in the construction of…

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Nonparametric estimation of conditional densities by generalized random forests

利用广义随机森林非参数估计条件密度

Considering a continuous random variable Y together with a continuous random vector X, I propose a nonparametric estimator f^(.|x) for the conditional density of Y given X=x. This estimator takes the form of an exponential series whose coefficients Tx = (Tx1,...,TxJ) are the solution of a system of nonlinear equations that depends on an estimator of the conditional expectation E[p(Y)|X=x], where p is a J-dimensional vector of basis functions. The distinguishing feature of…

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Debiased Nonparametric Regression for Statistical Inference and Distributionally Robustness

用于统计推断与分布稳健性的去偏非参数回归

This study proposes a debiasing method for smooth nonparametric estimators. While machine learning techniques such as random forests and neural networks have demonstrated strong predictive performance, their theoretical properties remain relatively underexplored. In particular, many modern algorithms lack guarantees of pointwise and uniform risk convergence, as well as asymptotic normality. These properties are essential for statistical inference and robust estimation and…

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fkbma: An R Package for Detecting Tailoring Variables with Free-Knot B-Splines and Bayesian Model Averaging

fkbma:以自由节点 B 样条和贝叶斯模型平均识别治疗定制变量的 R 包

Precision medicine aims to optimize treatment by identifying patient subgroups most likely to benefit from specific interventions. To support this goal, we introduce fkbma, an R package that implements a Bayesian model averaging approach with free-knot B-splines for identifying tailoring variables. The package employs a reversible jump Markov chain Monte Carlo algorithm to flexibly model treatment effect heterogeneity while accounting for uncertainty in both variable…

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H-AddiVortes: Heteroscedastic (Bayesian) Additive Voronoi Tessellations

异方差贝叶斯加性 Voronoi 镶嵌模型

This paper introduces the Heteroscedastic AddiVortes model, a Bayesian non-parametric regression framework that simultaneously models the conditional mean and variance of a response variable using adaptive Voronoi tessellations. By employing a sum-of-tessellations approach for the mean and a product-of-tessellations approach for the variance, the model provides a flexible and interpretable means to capture complex, predictor-dependent relationships and heteroscedastic…

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Compositional Models for Estimating Causal Effects

用于因果效应估计的组合式模型

Many real-world systems can be usefully represented as sets of interacting components. Examples include computational systems, such as query processors and compilers, natural systems, such as cells and ecosystems, and social systems, such as families and organizations. However, current approaches to estimating potential outcomes and causal effects typically treat such systems as single units, represent them with a fixed set of variables, and assume a homogeneous…

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A Doubly Robust Instrumental Variable Approach for Estimating Average Treatment Effects in Time-to-Event Data with Unmeasured Confounding: Application to Real-World Data on ICU Patients with Septic Shock

未测混杂下生存结局平均处理效应的双重稳健工具变量方法

Motivated by conflicting conclusions regarding hydrocortisone's treatment effect on ICU patients with vasopressor-dependent septic shock, we developed a novel instrumental variable (IV) estimator to assess the average treatment effect (ATE) in time-to-event data. In real-world data, IV methods are widely used for estimating causal treatment effects in the presence of unmeasured confounding, but existing approaches for time-to-event outcomes are often constrained by strong…

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Sequential Kernel Embedding for Mediated and Time-Varying Dose Response Curves

中介与时变剂量反应曲线的序贯核嵌入

We propose simple nonparametric estimators for mediated and time-varying dose response curves based on kernel ridge regression. By embedding Pearl's mediation formula and Robins' g-formula with kernels, we allow treatments, mediators, and covariates to be continuous in general spaces, and also allow for nonlinear treatment-confounder feedback. Our key innovation is a reproducing kernel Hilbert space technique called sequential kernel embedding, which we use to construct…

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Causal Representation Learning from Multimodal Biomedical Observations

从多模态生物医学观测中学习因果表征

Prevalent in biomedical applications (e.g., human phenotype research), multimodal datasets can provide valuable insights into the underlying physiological mechanisms. However, current machine learning (ML) models designed to analyze these datasets often lack interpretability and identifiability guarantees, which are essential for biomedical research. Recent advances in causal representation learning have shown promise in identifying interpretable latent causal variables with…

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Simultaneous inference for generalized linear models with unmeasured confounders

含未测混杂因素的广义线性模型同时推断

Tens of thousands of simultaneous hypothesis tests are routinely performed in genomic studies to identify differentially expressed genes. However, due to unmeasured confounders, many standard statistical approaches may be substantially biased. This paper investigates the large-scale hypothesis testing problem for multivariate generalized linear models in the presence of confounding effects. Under arbitrary confounding mechanisms, we propose a unified statistical estimation…

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Penalized Principal Component Analysis for Large-dimension Factor Model with Group Pursuit

带群组识别的高维因子模型惩罚主成分分析

This paper investigates the intrinsic group structures within the framework of large-dimensional approximate factor models, which portrays homogeneous effects of the common factors on the individuals that fall into the same group. To this end, we propose a fusion Penalized Principal Component Analysis (PPCA) method and derive a closed-form solution for the $\ell_2$-norm optimization problem. We also show the asymptotic properties of our proposed PPCA estimates. With the PPCA…

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Graph Topic Modeling for Documents with Spatial or Covariate Dependencies

面向具有空间或协变量依赖文档的图主题建模

We address the challenge of incorporating document-level metadata into topic modeling to improve topic mixture estimation. To overcome the computational complexity and lack of theoretical guarantees in existing Bayesian methods, we extend probabilistic latent semantic indexing (pLSI), a frequentist framework for topic modeling, by incorporating document-level covariates or known similarities between documents through a graph formalism. Modeling documents as nodes and edges…

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Excess Mean Squared Error of Empirical Bayes Estimators

经验贝叶斯估计量的超额均方误差

Empirical Bayes estimators are based on minimizing the average risk with the hyper-parameters in the weighting function being estimated from observed data. The performance of an empirical Bayes estimator is typically evaluated by its mean squared error (MSE). However, the explicit expression for its MSE is generally unavailable for finite sample sizes. To address this issue, we define a high-order analytical criterion: the excess MSE. It quantifies the performance difference…

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Generalized network autoregressive modelling of longitudinal networks with application to presidential elections in the USA

纵向网络的广义网络自回归建模及美国总统选举应用

Longitudinal networks are becoming increasingly relevant in the study of dynamic processes characterised by known or inferred community structure. Generalised Network Autoregressive (GNAR) models provide a parsimonious framework for exploiting the underlying network and multivariate time series. We introduce the community-$α$ GNAR model with interactions that exploits prior knowledge or exogenous variables for analysing interactions within and between communities, and can…

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Benign Overfitting in Time Series Linear Models with Over-Parameterization

过参数化时间序列线性模型中的良性过拟合

The success of large-scale models in recent years has increased the importance of statistical models with numerous parameters. Several studies have analyzed over-parameterized linear models with high-dimensional data, which may not be sparse; however, existing results rely on the assumption of sample independence. In this study, we analyze a linear regression model with dependent time-series data in an over-parameterized setting. We consider an estimator using interpolation…

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The Breakdown of Gaussian Universality in Classification of High-dimensional Linear Factor Mixtures

高维线性因子混合分类中高斯普适性的失效

The assumption of Gaussian or Gaussian mixture data has been extensively exploited in a long series of precise performance analyses of machine learning (ML) methods, on large datasets having comparably numerous samples and features. To relax this restrictive assumption, subsequent efforts have been devoted to establish "Gaussian equivalent principles" by studying scenarios of Gaussian universality where the asymptotic performance of ML methods on non-Gaussian data remains…

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Designing Graph Convolutional Neural Networks for Discrete Choice with Network Effects

面向具有网络效应的离散选择设计图卷积神经网络

We introduce a novel model architecture that incorporates network effects into discrete choice problems, achieving higher predictive performance than standard discrete choice models while offering greater interpretability than general-purpose flexible model classes. Econometric discrete choice models aid in studying individual decision-making, where agents select the option with the highest reward from a discrete set of alternatives. Intuitively, the utility an individual…

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Minimax Optimality of the Probability Flow ODE for Diffusion Models

扩散模型概率流 ODE 的极小极大最优性

Score-based diffusion models have become a foundational paradigm for modern generative modeling, demonstrating exceptional capability in generating samples from complex high-dimensional distributions. Despite the dominant adoption of probability flow ODE-based samplers in practice due to their superior sampling efficiency and precision, rigorous statistical guarantees for these methods have remained elusive in the literature. This work develops the first end-to-end…

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A generalized Bayesian approach for high-dimensional robust regression with serially correlated errors and predictors

高维稳健回归的广义贝叶斯方法:序列相关误差与预测变量

This paper introduces a loss-based generalized Bayesian methodology for high-dimensional robust regression with serially correlated errors and predictors. The proposed framework employs a novel scaled pseudo-Huber (SPH) loss function, which smooths the well-known Huber loss, effectively balancing quadratic ($\ell_2$) and absolute linear ($\ell_1$) loss behaviors. This flexibility enables the framework to accommodate both thin-tailed and heavy-tailed data efficiently. The…

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Self-Consistent Equation-guided Neural Networks for Censored Time-to-Event Data

自洽方程引导的神经网络用于删失时间事件数据

In survival analysis, estimating the conditional survival function given predictors is often of interest. There is a growing trend in the development of deep learning methods for analyzing censored time-to-event data, especially when dealing with high-dimensional predictors that are complexly interrelated. Many existing deep learning approaches for estimating the conditional survival functions extend the Cox regression models by replacing the linear function of predictor…

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High-dimensional covariance matrix regularization using informative targets

利用信息性目标矩阵的高维协方差矩阵正则化

The sample covariance matrix becomes non-invertible in high-dimensional settings, making classical multivariate statistical methods inapplicable. Various regularization techniques address this issue by imposing a structured target matrix to improve stability and invertibility. While diagonal matrices are commonly used as targets due to their simplicity, more informative target matrices can enhance performance. This paper explores the use of such targets and estimates the…

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A Multi-Omics Framework for Survival Mediation Analysis of High-Dimensional Proteogenomic Data

高维蛋白基因组数据的多组学生存中介分析框架

Survival analysis plays a crucial role in understanding time-to-event (survival) outcomes such as disease progression. Despite recent advancements in causal mediation frameworks for survival analysis, existing methods are typically based on Cox regression and primarily focus on a single exposure or individual omics layers, often overlooking multi-omics interplay. This limitation hinders the full potential of integrated biological insights. In this paper, we propose SMAHP, a…

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