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Incorporating sparse labels into hidden Markov models using weighted likelihoods improves accuracy and interpretability in biologging studies

利用加权似然将稀疏标签纳入隐马尔可夫模型:生物记录研究中的准确性与可解释性

Ecologists often use a hidden Markov model to decode a latent process, such as a sequence of an animal's behaviours, from an observed biologging time series. Modern technological devices such as video recorders and drones now allow researchers to directly observe an animal's behaviour. Using these observations as labels of the latent process can improve a hidden Markov model's accuracy when decoding the latent process. However, many wild animals are observed infrequently.…

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Computationally Efficient Estimation of Large Probit Models

大型 Probit 模型的高效计算估计

Probit models are useful for modeling correlated discrete responses in many disciplines, including consumer choice data in economics and marketing. However, the Gaussian latent variable feature of probit models coupled with identification constraints pose significant computational challenges for its estimation and inference, especially when the dimension of the discrete response variable is large. In this paper, we propose a computationally efficient Expectation-Maximization…

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Non-parametric efficient estimation of marginal structural models with multi-valued time-varying treatments

多值时变处理下边际结构模型的非参数有效估计

Marginal structural models are a popular method for estimating causal effects in the presence of time-varying exposures. In spite of their popularity, no scalable non-parametric estimator exist for marginal structural models with multi-valued and time-varying treatments. In this paper, we use machine learning together with recent developments in semiparametric efficiency theory for longitudinal studies to propose such an estimator. The proposed estimator is based on a study…

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Estimating Heterogeneous Treatment Effects on Survival Outcomes Using Counterfactual Censoring Unbiased Transformations

利用反事实删失无偏变换估计生存结局的异质性处理效应

Methods for estimating heterogeneous treatment effects (HTE) from observational data have largely focused on continuous or binary outcomes, with less attention paid to survival outcomes and almost none to settings with competing risks. In this work, we develop censoring unbiased transformations (CUTs) for survival outcomes both with and without competing risks. After converting time-to-event outcomes using these CUTs, direct application of HTE learners for continuous…

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The mosaic permutation test: an exact and nonparametric goodness-of-fit test for factor models

马赛克置换检验:因子模型的精确非参数拟合优度检验

Financial firms often rely on fundamental factor models to explain correlations among asset returns and manage risk. Yet after major events, e.g., COVID-19, analysts may reassess whether existing risk models continue to fit well: specifically, after accounting for a set of known factor exposures, are the residuals of the asset returns independent? With this motivation, we introduce the mosaic permutation test, a nonparametric goodness-of-fit test for preexisting factor…

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A Diagnostic Tool for Functional Causal Discovery

函数型因果发现的诊断工具

Causal discovery methods aim to determine the causal direction between variables using observational data. Functional causal discovery methods, such as those based on the Linear Non-Gaussian Acyclic Model (LiNGAM), rely on structural and distributional assumptions to infer the causal direction. However, approaches for assessing causal discovery methods' performance as a function of sample size or the impact of assumption violations, inevitable in real-world scenarios, are…

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Gaussian Processes for Time Series with Lead-Lag Effects with applications to biology data

具有领先—滞后效应的时间序列高斯过程及其生物数据应用

Investigating the relationship, particularly the lead-lag effect, between time series is a common question across various disciplines, especially when uncovering biological process. However, analyzing time series presents several challenges. Firstly, due to technical reasons, the time points at which observations are made are not at uniform inintervals. Secondly, some lead-lag effects are transient, necessitating time-lag estimation based on a limited number of time points.…

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Model Averaging and Double Machine Learning

模型平均与双重机器学习

This paper discusses pairing double/debiased machine learning (DDML) with stacking, a model averaging method for combining multiple candidate learners, to estimate structural parameters. In addition to conventional stacking, we consider two stacking variants available for DDML: short-stacking exploits the cross-fitting step of DDML to substantially reduce the computational burden and pooled stacking enforces common stacking weights over cross-fitting folds. Using calibrated…

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Sparsity, Regularization and Causality in Agricultural Yield: The Case of Paddy Rice in Peru

农业产量中的稀疏性、正则化与因果性:秘鲁水稻案例

This study introduces a novel approach that integrates agricultural census data with remotely sensed time series to develop precise predictive models for paddy rice yield across various regions of Peru. By utilizing sparse regression and Elastic-Net regularization techniques, the study identifies causal relationships between key remotely sensed variables-such as NDVI, precipitation, and temperature-and agricultural yield. To further enhance prediction accuracy, the first-…

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Gaussian Processes for Observational Dose-Response Inference

用于观察性剂量—反应推断的高斯过程

We adapt Gaussian processes for estimating the average dose-response function in observational settings, introducing a powerful complement to treatment effect estimation for understanding heterogeneous effects. We incorporate samples from a Gaussian process posterior for the propensity score into a Gaussian process response model using Girard's approach to integrating over uncertainty in training data. We show Girard's method admits a positive-definite kernel, and provide…

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Bayesian inference for group-level cortical surface image-on-scalar-regression with Gaussian process priors

组水平皮层表面图像-标量回归的高斯过程贝叶斯推断

In regression-based analyses of group-level neuroimage data researchers typically fit a series of marginal general linear models to image outcomes at each spatially-referenced pixel. Spatial regularization of effects of interest is usually induced indirectly by applying spatial smoothing to the data during preprocessing. While this procedure often works well, resulting inference can be poorly calibrated. Spatial modeling of effects of interest leads to more powerful…

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Bayesian Variable Selection and Sparse Estimation for High-Dimensional Graphical Models

高维图模型的贝叶斯变量选择与稀疏估计

We introduce a novel Bayesian approach for both covariate selection and sparse precision matrix estimation in the context of high-dimensional Gaussian graphical models involving multiple responses. Our approach provides a sparse estimation of the three distinct sparsity structures: the regression coefficient matrix, the conditional dependency structure among responses, and between responses and covariates. This contrasts with existing methods, which typically focus on any…

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Asymptotic considerations in a Bayesian linear model with nonparametrically modelled time series innovations

创新项时间序列非参数建模下贝叶斯线性模型的渐近分析

This paper considers a semiparametric approach within the general Bayesian linear model where the innovations consist of a stationary, mean zero Gaussian time series. While a parametric prior is specified for the linear model coefficients, the autocovariance structure of the time series is modeled nonparametrically using a Bernstein-Gamma process prior for the spectral density function, the Fourier transform of the autocovariance function. When updating this joint prior with…

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High Dimensional Logistic Regression Under Network Dependence

网络依赖下的高维逻辑回归

Logistic regression is key method for modeling the probability of a binary outcome based on a collection of covariates. However, the classical formulation of logistic regression relies on the independent sampling assumption, which is often violated when the outcomes interact through an underlying network structure, such as over a temporal/spatial domain or on a social network. This necessitates the development of models that can simultaneously handle both the network…

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A Bayesian joint model for mediation analysis with matrix-valued mediators

矩阵值中介变量的贝叶斯联合中介分析模型

Unscheduled treatment interruptions may lead to reduced quality of care in radiation therapy (RT). Identifying the RT prescription dose effects on the outcome of treatment interruptions, mediated through doses distributed into different organs-at-risk (OARs), can inform future treatment planning. The radiation exposure to OARs can be summarized by a matrix of dose-volume histograms (DVH) for each patient. Although various methods for high-dimensional mediation analysis have…

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Linear Contextual Bandits with Interference

存在干扰的线性情境老虎机

Interference, a key concept in causal inference, extends the reward modeling process by accounting for the impact of one unit's actions on the rewards of others. In contextual bandit (CB) settings, where multiple units are present in the same round, potential interference can significantly affect the estimation of expected rewards for different arms, thereby influencing the decision-making process. Although some prior work has explored multi-agent and adversarial bandits in…

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Detecting Multiple Structural Breaks in Systems of Linear Regression Equations with Integrated and Stationary Regressors

含单整与平稳解释变量的线性回归方程系统多重结构突变检测

In this paper, we propose a two-step procedure based on the group LASSO estimator in combination with a backward elimination algorithm to detect multiple structural breaks in linear regressions with multivariate responses. Applying the two-step estimator, we jointly detect the number and location of structural breaks, and provide consistent estimates of the coefficients. Our framework is flexible enough to allow for a mix of integrated and stationary regressors, as well as…

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Fighting Noise with Noise: Causal Inference with Many Candidate Instruments

以噪声对抗噪声:大量候选工具变量下的因果推断

Instrumental variable methods provide useful tools for inferring causal effects in the presence of unmeasured confounding. To apply these methods with large-scale data sets, a major challenge is to find valid instruments from a possibly large candidate set. In practice, most of the candidate instruments are often not relevant for studying a particular exposure of interest. Moreover, not all relevant candidate instruments are valid as they may directly influence the outcome…

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An Autoregressive Model for Time Series of Random Objects

随机对象时间序列的自回归模型

Random variables in metric spaces indexed by time and observed at equally spaced time points are receiving increased attention due to their broad applicability. The absence of inherent structure in metric spaces has resulted in a literature that is predominantly non-parametric and model-free. To address this gap in models for time series of random objects, we introduce an adaptation of the classical linear autoregressive model tailored for data lying in a Hadamard space. The…

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Counterfactual Slopes and Their Applications in Social Stratification

反事实斜率及其在社会分层研究中的应用

This paper addresses two prominent theses in social stratification research, the great equalizer thesis and Mare's (1980) school transition thesis. Both theses describe the role of an intermediate educational transition in the association between socioeconomic status and an outcome variable. However, the descriptive regularities of the two theses may be driven by differential selection into the intermediate transition, which prevents the two theses from having substantive…

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Batches Stabilize the Minimum Norm Risk in High Dimensional Overparameterized Linear Regression

批处理稳定高维过参数化线性回归中的最小范数风险

Learning algorithms that divide the data into batches are prevalent in many machine-learning applications, typically offering useful trade-offs between computational efficiency and performance. In this paper, we examine the benefits of batch-partitioning through the lens of a minimum-norm overparametrized linear regression model with isotropic Gaussian features. We suggest a natural small-batch version of the minimum-norm estimator and derive bounds on its quadratic risk. We…

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Functional Factor Modeling of Brain Connectivity

脑连接的函数型因子建模

Many fMRI analyses examine functional connectivity, or statistical dependencies among remote brain regions. Yet popular methods for studying whole-brain functional connectivity often yield results that are difficult to interpret. Factor analysis offers a natural framework in which to study such dependencies, particularly given its emphasis on interpretability. However, multivariate factor models break down when applied to functional and spatiotemporal data, like fMRI. We…

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A simple but powerful tail index regression

一种简单而有力的尾指数回归

This paper introduces a flexible framework for the estimation of the conditional tail index of heavy tailed distributions. In this framework, the tail index is computed from an auxiliary linear regression model that facilitates estimation and inference based on established econometric methods, such as ordinary least squares (OLS), least absolute deviations, or M-estimation. We show theoretically and via simulations that OLS provides interesting results. Our Monte Carlo…

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Physics-informed kernel learning

物理信息核学习

Physics-informed machine learning typically integrates physical priors into the learning process by minimizing a loss function that includes both a data-driven term and a partial differential equation (PDE) regularization. Building on the formulation of the problem as a kernel regression task, we use Fourier methods to approximate the associated kernel, and propose a tractable estimator that minimizes the physics-informed risk function. We refer to this approach as…

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