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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Bayesian Causal Inference with Gaussian Process Networks

基于高斯过程网络的贝叶斯因果推断

Causal discovery and inference from observational data is an essential problem in statistics posing both modeling and computational challenges. These are typically addressed by imposing strict assumptions on the joint distribution such as linearity. We consider the problem of the Bayesian estimation of the effects of hypothetical interventions in the Gaussian Process Network (GPN) model, a flexible causal framework which allows describing the causal relationships…

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Multivariate ordinal regression for multiple repeated measurements

多重重复测量的多变量有序回归

In this paper we propose a multivariate ordinal regression model which allows the joint modeling of three-dimensional panel data containing both repeated and multiple measurements for a collection of subjects. This is achieved by a multivariate autoregressive structure on the errors of the latent variables underlying the ordinal responses, where we distinguish between the correlations at a single point in time and the persistence over time. The error distribution is assumed…

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A Hierarchical Random Effects State-space Model for Modeling Brain Activities from Electroencephalogram Data

用于脑电活动分析的分层随机效应状态空间模型

Mental disorders present challenges in diagnosis and treatment due to their complex and heterogeneous nature. Electroencephalogram (EEG) has shown promise as a potential biomarker for these disorders. However, existing methods for analyzing EEG signals have limitations in addressing heterogeneity and capturing complex brain activity patterns between regions. This paper proposes a novel random effects state-space model (RESSM) for analyzing large-scale multi-channel…

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Comparing MCMC algorithms in Stochastic Volatility Models using Simulation Based Calibration

利用基于模拟的校准比较随机波动模型中的 MCMC 算法

Simulation Based Calibration (SBC) is applied to analyse two commonly used, competing Markov chain Monte Carlo algorithms for estimating the posterior distribution of a stochastic volatility model. In particular, the bespoke 'off-set mixture approximation' algorithm proposed by Kim, Shephard, and Chib (1998) is explored together with a Hamiltonian Monte Carlo algorithm implemented through Stan. The SBC analysis involves a simulation study to assess whether each sampling…

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Local Projections vs. VARs: Lessons From Thousands of DGPs

局部投影与VAR:来自数千种数据生成过程的经验

We conduct a simulation study of Local Projection (LP) and Vector Autoregression (VAR) estimators of structural impulse responses across thousands of data generating processes, designed to mimic the properties of the universe of U.S. macroeconomic data. Our analysis considers various identification schemes and several variants of LP and VAR estimators, employing bias correction, shrinkage, or model averaging. A clear bias-variance trade-off emerges: LP estimators have lower…

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Drift vs Shift: Decoupling Trends and Changepoint Analysis

漂移与突变:趋势和变点分析的分离

We introduce a new approach for decoupling trends (drift) and changepoints (shifts) in time series. Our locally adaptive model-based approach for robustly decoupling combines Bayesian trend filtering and machine learning based regularization. An over-parameterized Bayesian dynamic linear model (DLM) is first applied to characterize drift. Then a weighted penalized likelihood estimator is paired with the estimated DLM posterior distribution to identify shifts. We show how…

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Extrapolation of Relative Treatment Effects using Change-point Survival Models

利用变点生存模型外推相对治疗效应

Introduction: Modelling of relative treatment effects is an important aspect to consider when extrapolating the long-term survival outcomes of treatments. Flexible parametric models offer the ability to accurately model the observed data, however, the extrapolated relative treatment effects and subsequent survival function may lack face validity. Methods: We investigate the ability of change-point survival models to estimate changes in the relative treatment effects,…

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Bayesian principal stratification with longitudinal data and truncation by death

纵向数据与死亡截断下的贝叶斯主分层

In many causal studies, outcomes are censored by death, in the sense that they are neither observed nor defined for units who die. In such studies, the focus is usually on the stratum of always survivors up to a single fixed time s. Building on a recent strand of the literature, we propose an extended framework for the analysis of longitudinal studies, where units can die at different time points, and the main endpoints are observed and well defined only up to the death…

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Development of Choice Model for Brand Evaluation

用于品牌评估的消费者选择模型

Consumer choice modeling takes center stage as we delve into understanding how personal preferences of decision makers (customers) for products influence demand at the level of the individual. The contemporary choice theory is built upon the characteristics of the decision maker, alternatives available for the choice of the decision maker, the attributes of the available alternatives and decision rules that the decision maker uses to make a choice. The choice set in our…

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Particle Gibbs for Likelihood-Free Inference of State Space Models with Application to Stochastic Volatility

用于状态空间模型无似然推断的粒子 Gibbs 方法及随机波动率应用

State space models (SSMs) are widely used to describe dynamic systems. However, when the likelihood of the observations is intractable, parameter inference for SSMs cannot be easily carried out using standard Markov chain Monte Carlo or sequential Monte Carlo methods. In this paper, we propose a particle Gibbs sampler as a general strategy to handle SSMs with intractable likelihoods in the approximate Bayesian computation (ABC) setting. The proposed sampler incorporates a…

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Uncertainty Quantification in Heterogeneous Treatment Effect Estimation with Gaussian-Process-Based Partially Linear Model

基于高斯过程部分线性模型的异质性处理效应不确定性量化

Estimating heterogeneous treatment effects across individuals has attracted growing attention as a statistical tool for performing critical decision-making. We propose a Bayesian inference framework that quantifies the uncertainty in treatment effect estimation to support decision-making in a relatively small sample size setting. Our proposed model places Gaussian process priors on the nonparametric components of a semiparametric model called a partially linear model. This…

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Individual Updating of Subjective Probability of Homicide Victimization: a "Natural Experiment'' on Risk Communication

个体主观凶杀受害概率的更新:风险沟通的“自然实验”

We investigate the dynamics of the update of subjective homicide victimization risk after an informational shock by developing two econometric models able to accommodate both optimal decisions of changing prior expectations which enable us to rationalize skeptical Bayesian agents with their disregard to new information. We apply our models to a unique household data (N = 4,030) that consists of socioeconomic and victimization expectation variables in Brazil, coupled with an…

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Estimating Causal Impacts of Scaling a Voluntary Policy Intervention

自愿参与政策干预扩展实施的因果效应估计

Evaluations often inform future program implementation decisions. However, the implementation context may differ, sometimes substantially, from the evaluation study context. This difference leads to uncertainty regarding the relevance of evaluation findings to future decisions. Voluntary interventions pose another challenge to generalizability, as we do not know precisely who will volunteer for the intervention in the future. We present a novel approach for estimating target…

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Binary Spatial Random Field Reconstruction from Non-Gaussian Inhomogeneous Time-series Observations

基于非高斯非齐次时间序列观测重建二值空间随机场

We develop a new model for spatial random field reconstruction of a binary-valued spatial phenomenon. In our model, sensors are deployed in a wireless sensor network across a large geographical region. Each sensor measures a non-Gaussian inhomogeneous temporal process which depends on the spatial phenomenon. Two types of sensors are employed: one collects point observations at specific time points, while the other collects integral observations over time intervals.…

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BayesDAG: Gradient-Based Posterior Inference for Causal Discovery

BayesDAG:面向因果发现的梯度后验推断

Bayesian causal discovery aims to infer the posterior distribution over causal models from observed data, quantifying epistemic uncertainty and benefiting downstream tasks. However, computational challenges arise due to joint inference over combinatorial space of Directed Acyclic Graphs (DAGs) and nonlinear functions. Despite recent progress towards efficient posterior inference over DAGs, existing methods are either limited to variational inference on node permutation…

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Curved factor analysis with the Ellipsoid-Gaussian distribution

椭球高斯分布与曲面因子分析

There is a need for new models for characterizing dependence in multivariate data. The multivariate Gaussian distribution is routinely used, but cannot characterize nonlinear relationships in the data. Most non-linear extensions tend to be highly complex; for example, involving estimation of a non-linear regression model in latent variables. In this article, we propose a relatively simple class of Ellipsoid-Gaussian multivariate distributions, which are derived by using a…

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Bayesian Nonlinear Regression using Sums of Simple Functions

基于简单函数之和的贝叶斯非线性回归

This paper proposes a new Bayesian machine learning model that can be applied to large datasets arising in macroeconomics. Our framework sums over many simple two-component location mixtures. The transition between components is determined by a logistic function that depends on a single threshold variable and two hyperparameters. Each of these individual models only accounts for a minor portion of the variation in the endogenous variables. But many of them are capable of…

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Assessing treatment effect heterogeneity in the presence of missing effect modifier data in cluster-randomized trials

整群随机试验中效应修饰变量缺失时的治疗效应异质性评估

Understanding whether and how treatment effects vary across subgroups is crucial to inform clinical practice and recommendations. Accordingly, the assessment of heterogeneous treatment effects (HTE) based on pre-specified potential effect modifiers has become a common goal in modern randomized trials. However, when one or more potential effect modifiers are missing, complete-case analysis may lead to bias and under-coverage. While statistical methods for handling missing…

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Bayesian causal discovery from unknown general interventions

未知一般干预下的贝叶斯因果发现

We consider the problem of learning causal Directed Acyclic Graphs (DAGs) using combinations of observational and interventional experimental data. Current methods tailored to this setting assume that interventions either destroy parent-child relations of the intervened (target) nodes or only alter such relations without modifying the parent sets, even when the intervention targets are unknown. We relax this assumption by proposing a Bayesian method for causal discovery from…

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Applying the estimands framework to non-inferiority trials: guidance on choice of hypothetical estimands for non-adherence and comparison of estimation methods

非劣效试验中的估计目标框架:不依从的假想目标与估计方法比较

A common concern in non-inferiority (NI) trials is that non adherence due, for example, to poor study conduct can make treatment arms artificially similar. Because intention to treat analyses can be anti-conservative in this situation, per protocol analyses are sometimes recommended. However, such advice does not consider the estimands framework, nor the risk of bias from per protocol analyses. We therefore sought to update the above guidance using the estimands framework,…

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Adaptive Bayesian Learning with Action and State-Dependent Signal Variance

信号方差依赖行动与状态的自适应贝叶斯学习

This manuscript presents an advanced framework for Bayesian learning by incorporating action and state-dependent signal variances into decision-making models. This framework is pivotal in understanding complex data-feedback loops and decision-making processes in various economic systems. Through a series of examples, we demonstrate the versatility of this approach in different contexts, ranging from simple Bayesian updating in stable environments to complex models involving…

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A Sparse Factor Model for Clustering High-Dimensional Longitudinal Data

用于高维纵向数据聚类的稀疏因子模型

Recent advances in engineering technologies have enabled the collection of a large number of longitudinal features. This wealth of information presents unique opportunities for researchers to investigate the complex nature of diseases and uncover underlying disease mechanisms. However, analyzing such kind of data can be difficult due to its high dimensionality, heterogeneity and computational challenges. In this paper, we propose a Bayesian nonparametric mixture model for…

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Ensemble transport smoothing. Part I: Unified framework

集合输运平滑:第一部分,统一框架

Smoothers are algorithms for Bayesian time series re-analysis. Most operational smoothers rely either on affine Kalman-type transformations or on sequential importance sampling. These strategies occupy opposite ends of a spectrum that trades computational efficiency and scalability for statistical generality and consistency: non-Gaussianity renders affine Kalman updates inconsistent with the true Bayesian solution, while the ensemble size required for successful importance…

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Predictive Density Combination Using a Tree-Based Synthesis Function

利用树型合成函数组合预测密度

Bayesian predictive synthesis (BPS) provides a method for combining multiple predictive distributions based on agent/expert opinion analysis theory and encompasses a range of existing density forecast pooling methods. The key ingredient in BPS is a ``synthesis'' function. This is typically specified parametrically as a dynamic linear regression. In this paper, we develop a nonparametric treatment of the synthesis function using regression trees. We show the advantages of our…

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