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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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An adaptive enrichment design using Bayesian model averaging for selection and threshold-identification of tailoring variables

用贝叶斯模型平均选择个体化变量及识别阈值的自适应富集设计

Precision medicine stands as a transformative approach in healthcare, offering tailored treatments that can enhance patient outcomes and reduce healthcare costs. As understanding of complex disease improves, clinical trials are being designed to detect subgroups of patients with enhanced treatment effects. Biomarker-driven adaptive enrichment designs, which enroll a general population initially and later restrict accrual to treatment-sensitive patients, are gaining…

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Bayesian factor zero-inflated Poisson model for multiple grouped count data

多维分组计数数据的贝叶斯因子零膨胀泊松模型

This paper proposes a computationally efficient Bayesian factor model for multiple grouped count data. Adopting the link function approach, the proposed model can capture the association within and between the at-risk probabilities and Poisson counts over multiple dimensions. The likelihood function for the grouped count data consists of the differences of the cumulative distribution functions evaluated at the endpoints of the groups, defining the probabilities of each data…

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Bayesian Causal Synthesis for Meta-Inference on Heterogeneous Treatment Effects

用于异质性处理效应元推断的贝叶斯因果综合

The estimation of heterogeneous treatment effects in the potential outcome setting is biased when there exists model misspecification or unobserved confounding. As these biases are unobservable, what model to use when remains a critical open question. In this paper, we propose a novel Bayesian methodology to mitigate misspecification and improve estimation via a synthesis of multiple causal estimates, which we call Bayesian causal synthesis. Our development is built upon…

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Time-Varying Identification of Monetary Policy Shocks

货币政策冲击的时变识别

We propose a new Bayesian heteroskedastic Markov-switching structural vector autoregression with data-driven time-varying identification. The model selects alternative exclusion restrictions over time and, as a condition for the search, allows to verify identification through heteroskedasticity within each regime. Based on four alternative monetary policy rules, we show that a monthly six-variable system supports time variation in US monetary policy shock identification. In…

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Online Learning of Order Flow and Market Impact with Bayesian Change-Point Detection Methods

利用贝叶斯变点检测在线学习订单流与市场冲击

Financial order flow exhibits a remarkable level of persistence, wherein buy (sell) trades are often followed by subsequent buy (sell) trades over extended periods. This persistence can be attributed to the division and gradual execution of large orders. Consequently, distinct order flow regimes might emerge, which can be identified through suitable time series models applied to market data. In this paper, we propose the use of Bayesian online change-point detection (BOCPD)…

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Regularizing threshold priors with sparse response patterns in Bayesian factor analysis with categorical indicators

类别指标贝叶斯因子分析中稀疏响应模式的阈值先验正则化

Using instruments comprising ordered responses to items are ubiquitous for studying many constructs of interest. However, using such an item response format may lead to items with response categories infrequently endorsed or unendorsed completely. In maximum likelihood estimation, this results in non-existing estimates for thresholds. This work focuses on a Bayesian estimation approach to counter this issue. The issue changes from the existence of an estimate to how to…

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Predictive Decision Synthesis for Portfolios: Betting on Better Models

投资组合的预测决策综合:押注更好的模型

We discuss and develop Bayesian dynamic modelling and predictive decision synthesis for portfolio analysis. The context involves model uncertainty with a set of candidate models for financial time series with main foci in sequential learning, forecasting, and recursive decisions for portfolio reinvestments. The foundational perspective of Bayesian predictive decision synthesis (BPDS) defines novel, operational analysis and resulting predictive and decision outcomes. A…

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Prior Effective Sample Size When Borrowing on the Treatment Effect Scale

在治疗效应尺度借用外部信息时的先验有效样本量

With the robust uptick in the applications of Bayesian external data borrowing, eliciting a prior distribution with the proper amount of information becomes increasingly critical. The prior effective sample size (ESS) is an intuitive and efficient measure for this purpose. The majority of ESS definitions have been proposed in the context of borrowing control information. While many Bayesian models can be naturally extended to leveraging external information on the treatment…

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(Empirical) Bayes Approaches to Parallel Trends

应对平行趋势偏离的贝叶斯与经验贝叶斯方法

We consider Bayes and Empirical Bayes (EB) approaches for dealing with violations of parallel trends. In the Bayes approach, the researcher specifies a prior over both the pre-treatment violations of parallel trends $δ_{pre}$ and the post-treatment violations $δ_{post}$. The researcher then updates their posterior about the post-treatment bias $δ_{post}$ given an estimate of the pre-trends $δ_{pre}$. This allows them to form posterior means and credible sets for the…

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Weighted-Average Least Squares for Negative Binomial Regression

负二项回归的加权平均最小二乘法

Model averaging methods have become an increasingly popular tool for improving predictions and dealing with model uncertainty, especially in Bayesian settings. Recently, frequentist model averaging methods such as information theoretic and least squares model averaging have emerged. This work focuses on the issue of covariate uncertainty where managing the computational resources is key: The model space grows exponentially with the number of covariates such that averaged…

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Fast Variational Inference for Bayesian Factor Analysis in Single and Multi-Study Settings

单研究与多研究贝叶斯因子分析的快速变分推断

Factors models are routinely used to analyze high-dimensional data in both single-study and multi-study settings. Bayesian inference for such models relies on Markov Chain Monte Carlo (MCMC) methods which scale poorly as the number of studies, observations, or measured variables increase. To address this issue, we propose variational inference algorithms to approximate the posterior distribution of Bayesian latent factor models using the multiplicative gamma process…

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Joint mixed-effects models for causal inference in clustered network-based observational studies

聚类网络观察研究中用于因果推断的联合混合效应模型

Causal inference on populations embedded in social networks poses technical challenges, since the typical no interference assumption frequently does not hold. Existing methods developed in the context of network interference rely upon the assumption of no unmeasured confounding. However, when faced with multilevel network data, there may be a latent factor influencing both the exposure and the outcome at the cluster level. We propose a Bayesian inference approach that…

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Assessing the causes of continuous effects by posterior effects of causes

通过原因的后验效应评估连续结果的成因

To evaluate a single cause of a binary effect, Dawid et al. (2014) defined the probability of causation, while Pearl (2015) defined the probabilities of necessity and sufficiency. For assessing the multiple correlated causes of a binary effect, Lu et al. (2023) defined the posterior causal effects based on post-treatment variables. In many scenarios, outcomes are continuous, simply binarizing them and applying previous methods may result in information loss or biased…

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Bayesian Graphs of Intelligent Causation

策略性反应下的贝叶斯因果图

Probabilistic Graphical Bayesian models of causation have continued to impact on strategic analyses designed to help evaluate the efficacy of different interventions on systems. However, the standard causal algebras upon which these inferences are based typically assume that the intervened population does not react intelligently to frustrate an intervention. In an adversarial setting this is rarely an appropriate assumption. In this paper, we extend an established Bayesian…

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Bayesian Neural Networks for Macroeconomic Analysis

用于宏观经济分析的贝叶斯神经网络

Macroeconomic data is characterized by a limited number of observations (small T), many time series (big K) but also by featuring temporal dependence. Neural networks, by contrast, are designed for datasets with millions of observations and covariates. In this paper, we develop Bayesian neural networks (BNNs) that are well-suited for handling datasets commonly used for macroeconomic analysis in policy institutions. Our approach avoids extensive specification searches through…

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Supporting Bayesian modelling workflows with iterative filtering for multiverse analysis

以迭代筛选支持贝叶斯建模中的多宇宙分析

When building statistical models for Bayesian data analysis tasks, required and optional iterative adjustments and different modelling choices can give rise to numerous candidate models. In particular, checks and evaluations throughout the modelling process can motivate changes to an existing model or the consideration of alternative models to ultimately obtain models of sufficient quality for the problem at hand. Additionally, failing to consider alternative models can lead…

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Improving the Estimation of Site-Specific Effects and their Distribution in Multisite Trials

改进多地点试验中地点特定效应及其分布的估计

In multisite trials, researchers are often interested in several inferential goals: estimating treatment effects for each site, ranking these effects, and studying their distribution. This study seeks to identify optimal methods for estimating these targets. Through a comprehensive simulation study, we assess two strategies and their combined effects: semiparametric modeling of the prior distribution, and alternative posterior summary methods tailored to minimize specific…

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Assurance Methods for designing a clinical trial with a delayed treatment effect

延迟治疗效应下临床试验设计的保证概率方法

An assurance calculation is a Bayesian alternative to a power calculation. One may be performed to aid the planning of a clinical trial, specifically setting the sample size or to support decisions about whether or not to perform a study. Immuno-oncology is a rapidly evolving area in the development of anticancer drugs. A common phenomenon that arises in trials of such drugs is one of delayed treatment effects, that is, there is a delay in the separation of the survival…

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A loss discounting framework for model averaging and selection in time series models

时间序列模型平均与选择的损失折扣框架

We introduce a Loss Discounting Framework for model and forecast combination which generalises and combines Bayesian model synthesis and generalized Bayes methodologies. We use a loss function to score the performance of different models and introduce a multilevel discounting scheme which allows a flexible specification of the dynamics of the model weights. This novel and simple model combination approach can be easily applied to large scale model averaging/selection, can…

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Bayesian multivariate logistic regression for superiority and inferiority decision-making under observable treatment heterogeneity

可观测治疗异质性下优效与劣效决策的贝叶斯多元逻辑回归

The effects of treatments may differ between persons with different characteristics. Addressing such treatment heterogeneity is crucial to investigate whether patients with specific characteristics are likely to benefit from a new treatment. The current paper presents a novel Bayesian method for superiority decision-making in the context of randomized controlled trials with multivariate binary responses and heterogeneous treatment effects. The framework is based on three…

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Bayesian segmented Gaussian copula factor model for single-cell sequencing data

单细胞测序数据的贝叶斯分段高斯 Copula 因子模型

Single-cell sequencing technologies have significantly advanced molecular and cellular biology, offering unprecedented insights into cellular heterogeneity by allowing for the measurement of gene expression at an individual cell level. However, the analysis of such data is challenged by the prevalence of low counts due to dropout events and the skewed nature of the data distribution, which conventional Gaussian factor models struggle to handle effectively. To address these…

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Bayesian Nonparametric Trees for Principal Causal Effects

用于主分层因果效应的贝叶斯非参数树模型

Principal stratification analysis evaluates how causal effects of a treatment on a primary outcome vary across strata of units defined by their treatment effect on some intermediate quantity. This endeavor is substantially challenged when the intermediate variable is continuously scaled and there are infinitely many basic principal strata. We employ a Bayesian nonparametric approach to flexibly evaluate treatment effects across flexibly-modeled principal strata. The approach…

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kDGLM: a R package for Bayesian analysis of Generalized Dynamic Linear Models

kDGLM:广义动态线性模型贝叶斯分析的 R 包

This paper introduces kDGLM, an R package designed for Bayesian analysis of Generalized Dynamic Linear Models (GDLM), with a primary focus on both uni- and multivariate exponential families. Emphasizing sequential inference for time series data, the kDGLM package provides comprehensive support for fitting, smoothing, monitoring, and feed-forward interventions. The methodology employed by kDGLM, as proposed in Alves et al. (2024), seamlessly integrates with well-established…

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A Bayesian multilevel hidden Markov model with Poisson-lognormal emissions for intense longitudinal count data

密集纵向计数数据的贝叶斯多层泊松对数正态隐马尔可夫模型

Hidden Markov models (HMMs) are probabilistic methods in which observations are seen as realizations of a latent Markov process with discrete states that switch over time. Moving beyond standard statistical tests, HMMs offer a statistical environment to optimally exploit the information present in multivariate time series, uncovering the latent dynamics that rule them. Here, we extend the Poisson HMM to the multilevel framework, accommodating variability between individuals…

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