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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Bayesian Estimation and Regularization Techniques in Categorical Data Analysis

分类数据分析中的贝叶斯估计与正则化方法

This paper explores Bayesian estimation for categorical data, focusing on simple yet effective models that provide a foundation for applying more advanced methods accurately and reliably in real-world applications. We begin by revisiting Bayesian estimators for the binomial distribution and investigating their properties. Next, we develop hypothesis tests for categorical data (sign test, homogeneity test, symmetry test) based on regularized maximum likelihood estimates of…

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A Bayesian Optimal Phase II Design for Randomized Immunotherapy Trials with Delayed Treatment Effects

具有延迟治疗效应的随机免疫治疗试验贝叶斯最优二期设计

Immunotherapy has transformed cancer treatment, yet its delayed therapeutic effects often lead to non-proportional hazards, rendering many conventional phase II designs underpowered and prone to type I error inflation. To address this issue, we propose a novel Bayesian Optimal Phase II design (DTE-BOP2) that explicitly models the uncertainty in the separation timing of treatment effect. The treatment separation timepoint (denoted by S) is endowed with a truncated-Gamma…

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Estimating Fiscal Multipliers by Combining Statistical Identification with Potentially Endogenous Proxies

结合统计识别与潜在内生代理变量估计财政乘数

Different proxy variables used in fiscal policy SVARs lead to contradicting conclusions regarding the size of fiscal multipliers. Our analysis suggests that the conflicting results may stem from violations of the proxy exogeneity assumptions. We propose a novel approach to include proxy variables into a Bayesian non-Gaussian SVAR, tailored to accommodate potentially endogenous proxies. Using our model, we find that increasing government spending is more effective in…

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Bayesian Outlier Detection for Matrix-variate Models

矩阵变元模型的贝叶斯异常值检测

Anomalies in economic and financial data -- often linked to rare yet impactful events -- are of theoretical interest, but can also severely distort inference. Although outlier-robust methodologies can be used, many researchers prefer pre-processing strategies that remove outliers. In this work, an efficient sequential Bayesian framework is proposed for outlier detection based on the predictive Bayes Factor (BF). The proposed method is specifically designed for large,…

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Network Modeling of Asynchronous Change-Points in Multivariate Time Series

多变量时间序列中异步变点的网络建模

This article introduces a novel Bayesian method for asynchronous change-point detection in multivariate time series. This method allows for change-points to occur earlier in some (leading) series followed, after a short delay, by change-points in some other (lagging) series. Such dynamic dependence structure is common in fields such as seismology and neurology where a latent event such as an earthquake or seizure causes certain sensors to register change-points before…

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The Bayesian Context Trees State Space Model for time series modelling and forecasting

用于时间序列建模与预测的贝叶斯上下文树状态空间模型

A hierarchical Bayesian framework is introduced for developing tree-based mixture models for time series, partly motivated by applications in finance and forecasting. At the top level, meaningful discrete states are identified as appropriately quantised values of some of the most recent samples. At the bottom level, a different, arbitrary base model is associated with each state. This defines a very general framework that can be used in conjunction with any existing model…

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Network inference via approximate Bayesian computation. Illustration on a stochastic multi-population neural mass model

近似贝叶斯计算的网络推断:随机多群体神经质量模型示例

In this article, we propose an adapted sequential Monte Carlo approximate Bayesian computation (SMC-ABC) algorithm for network inference in coupled stochastic differential equations (SDEs) used for multivariate time series modeling. Our approach is motivated by neuroscience, specifically the challenge of estimating brain connectivity before and during epileptic seizures. To this end, we make four key contributions. First, we introduce a 6N-dimensional SDE to model the…

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Scalable Bayesian inference on high-dimensional multivariate linear regression

高维多元线性回归的可扩展贝叶斯推断

We consider jointly estimating the coefficient matrix and the error precision matrix in high-dimensional multivariate linear regression models. Bayesian methods in this context often face computational challenges, leading to previous approaches that either utilize a generalized likelihood without ensuring the positive definiteness of the precision matrix or rely on maximization algorithms targeting only the posterior mode, thus failing to address uncertainty. In this work,…

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Missing data imputation using a truncated Gaussian infinite factor model with application to metabolomics data

用于代谢组缺失值插补的截断高斯无限因子模型

Metabolomics is the study of small molecules in biological samples. Metabolomics data are typically high-dimensional and contain highly correlated variables and frequent missing values. Both missing at random (MAR) data, due to acquisition or processing errors, and missing not at random (MNAR) data, caused by values falling below detection thresholds, are common. Thus, imputation is a critical component of downstream analysis. Existing imputation methods generally assume one…

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Regularized e-processes: anytime valid inference with knowledge-based efficiency gains

正则化 e-过程:具有知识驱动效率增益的任意时刻有效推断

Classical statistical methods have theoretical justification when the sample size is predetermined. In applications, however, it's often the case that sample sizes are data-dependent rather than predetermined. The aforementioned methods aren't reliable in this latter case, hence the recent interest in e-processes and methods that are anytime valid, i.e., reliable for any dynamic data-collection plan. But if the investigator has relevant-yet-incomplete prior information about…

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Joint Quantile Shrinkage: A State-Space Approach toward Non-Crossing Bayesian Quantile Models

联合分位数收缩:面向非交叉贝叶斯分位数模型的状态空间方法

Crossing of fitted conditional quantiles is a prevalent problem for quantile regression models. We propose a new Bayesian modelling framework that penalises multiple quantile regression functions toward the desired non-crossing space. We achieve this by estimating multiple quantiles jointly with a prior on variation across quantiles, a fused shrinkage prior with quantile adaptivity. The posterior is derived from a decision-theoretic general Bayes perspective, whose form…

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Gender disparities in rehospitalisations after coronary artery bypass grafting: evidence from a sparse functional causal mediation analysis of the MIMIC-IV data

冠状动脉旁路移植术后再住院的性别差异:MIMIC-IV 数据的稀疏函数因果中介分析

Hospital readmissions following coronary artery bypass grafting (CABG) not only impose a substantial cost burden on healthcare systems but also serve as a potential indicator of the quality of medical care. Previous studies of gender effects on complications after CABG surgery have consistently revealed that women tend to suffer worse outcomes. To better understand the causal pathway from gender to the number of rehospitalisations, we study the postoperative central venous…

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Discrete Autoregressive Switching Processes with Cumulative Shrinkage Priors for Graphical Modeling of Time Series Data

采用累积收缩先验的离散自回归切换过程与时间序列图建模

We propose a flexible Bayesian approach for sparse Gaussian graphical modeling of multivariate time series. We account for temporal correlation in the data by assuming that observations are characterized by an underlying and unobserved hidden discrete autoregressive process. We assume multivariate Gaussian emission distributions and capture spatial dependencies by modeling the state-specific precision matrices via graphical horseshoe priors. We characterize the mixing…

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Reasonable uncertainty: Confidence intervals in empirical Bayes discrimination detection

合理量化不确定性:经验贝叶斯歧视检测中的置信区间

We revisit empirical Bayes discrimination detection, focusing on uncertainty arising from both partial identification and sampling variability. While prior work has mostly focused on partial identification, we find that some empirical findings are not robust to sampling uncertainty. To better connect statistical evidence to the magnitude of real-world discriminatory behavior, we propose a counterfactual odds-ratio estimand with a attractive properties and interpretation. Our…

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Bayesian Double Machine Learning for Causal Inference

用于因果推断的贝叶斯双重机器学习

This paper proposes a simple, novel, and fully-Bayesian approach for causal inference in partially linear models with high-dimensional control variables. Off-the-shelf machine learning methods can introduce biases in the causal parameter known as regularization-induced confounding. To address this, we propose a Bayesian Double Machine Learning (BDML) method, which modifies a standard Bayesian multivariate regression model and recovers the causal effect of interest from the…

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A note on simulation methods for the Dirichlet-Laplace prior

Dirichlet–Laplace 先验模拟方法的一则说明

Bhattacharya et al. (2015, Journal of the American Statistical Association 110(512): 1479-1490) introduce a novel prior, the Dirichlet-Laplace (DL) prior, and propose a Markov chain Monte Carlo (MCMC) method to simulate posterior draws under this prior in a conditionally Gaussian setting. The original algorithm samples from conditional distributions in the wrong order, i.e., it does not correctly sample from the joint posterior distribution of all latent variables. This note…

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Simulation-based inference using splitting schemes for partially observed diffusions in chemical reaction networks

化学反应网络中部分观测扩散过程的基于分裂格式的模拟推断

We address the problem of simulation and parameter inference for chemical reaction networks described by the chemical Langevin equation, a stochastic differential equation (SDE) representation of the dynamics of the chemical species. This is challenging for two main reasons. First, the (multi-dimensional) SDEs cannot be explicitly solved and are driven by multiplicative and non-commutative noise, requiring the development of advanced numerical schemes for their approximation…

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Bayesian Models for Joint Selection of Features and Auto-Regressive Lags: Theory and Applications in Environmental and Financial Forecasting

特征与自回归滞后的贝叶斯联合选择:环境与金融预测应用

We develop a Bayesian framework for variable selection in linear regression with autocorrelated errors, accommodating lagged covariates and autoregressive structures. This setting occurs in time series applications where responses depend on contemporaneous or past explanatory variables and persistent stochastic shocks, including financial modeling, hydrological forecasting, and meteorological applications requiring temporal dependency capture. Our methodology uses…

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Sensitivity Analysis to Unobserved Confounding with Copula-based Normalizing Flows

基于 Copula 标准化流的未观测混杂敏感性分析

We propose a novel method for sensitivity analysis to unobserved confounding in causal inference. The method builds on a copula-based causal graphical normalizing flow that we term $ρ$-GNF, where $ρ\in [-1,+1]$ is the sensitivity parameter. The parameter represents the non-causal association between exposure and outcome due to unobserved confounding, which is modeled as a Gaussian copula. In other words, the $ρ$-GNF enables scholars to estimate the average causal effect…

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Quasi-Bayes in Latent Variable Models

潜变量模型中的准贝叶斯方法

Latent variable models are widely used to account for unobserved determinants of economic behavior. This paper introduces a quasi-Bayes approach to nonparametrically estimate a large class of latent variable models. As an application, we model U.S. individual log earnings from the Panel Study of Income Dynamics (PSID) as the sum of latent permanent and transitory components. Simulations illustrate the favorable performance of quasi-Bayes estimators relative to common…

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Bayesian online collective anomaly and change point detection in fine-grained time series

细粒度时间序列中群体异常与变点的贝叶斯在线检测

Fine-grained time series data are crucial for accurate and timely online change detection. While both collective anomalies and change points can coexist in such data, their joint online detection has received limited attention. In this research, we develop a Bayesian framework capturing time series with collective anomalies and change points, and introduce a recursive online inference algorithm to detect the most recent collective anomaly and change point jointly. For…

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Bayesian MI-LASSO for Variable Selection on Multiply-Imputed Data

多重插补数据的贝叶斯MI-LASSO变量选择

Multiple imputation is widely used for handling missing data in real-world applications. For variable selection on multiply-imputed datasets, however, if selection is performed on each imputed dataset separately, it can result in different sets of selected variables across datasets. MI-LASSO, one of the most commonly used approaches to this problem, regards the same variable across all separate imputed datasets as a group variable and exploits the group LASSO to yield a…

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Bayesian Sensitivity Analyses for Policy Evaluation with Difference-in-Differences under Violations of Parallel Trends

平行趋势违背下双重差分政策评估的贝叶斯敏感性分析

Violations of the parallel trends assumption pose significant challenges for causal inference in difference-in-differences (DiD) studies, especially in policy evaluations where pre-treatment dynamics and external shocks may bias estimates. In this work, we propose a Bayesian DiD framework to allow us to estimate the effect of policies when parallel trends is violated. To address potential deviations from the parallel trends assumption, we introduce a formal sensitivity…

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Consistent DAG selection for Bayesian causal discovery under general error distributions

一般误差分布下贝叶斯因果发现的 DAG 选择一致性

We consider the problem of learning the underlying causal structure among a set of variables, which are assumed to follow a Bayesian network or, more specifically, a linear recursive structural equation model (SEM) with the associated errors being independent and allowed to be non-Gaussian. A Bayesian hierarchical model is proposed to identify the true data-generating directed acyclic graph (DAG) structure where the nodes and edges represent the variables and the direct…

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