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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Detecting Model Misspecification in Bayesian Inverse Problems via Variational Gradient Descent

基于变分梯度下降的贝叶斯反问题模型误设检测

Bayesian inference is optimal when the statistical model is well-specified, while outside this setting Bayesian inference can catastrophically fail; accordingly a wealth of post-Bayesian methodologies have been proposed. Predictively oriented (PrO) approaches lift the statistical model $P_θ$ to an (infinite) mixture model $\int P_θ\; \mathrm{d}Q(θ)$ and fit this predictive distribution via minimising an entropy-regularised objective functional. In the well-specified setting…

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Bayesian genome-wide clustering and variable selection of transcriptomic data via rank-based mixtures

基于秩混合模型的转录组数据贝叶斯全基因组聚类与变量选择

With the increasing availability of ranking data, there has been a growing demand for appropriate unsupervised rank-based inferential frameworks capable of handling high-dimensional datasets and providing uncertainty quantification for all estimates. Rank-based methods have also seen a growing popularity in -omics pipelines, as ranking continuous measurements provides a robust means of handling non-normally distributed data. The Bayesian Mallows model (BMM) has emerged as a…

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Directional-Shift Dirichlet ARMA Models for Compositional Time Series with Structural Break Intervention

具有结构突变干预的方向位移 Dirichlet ARMA 组成时间序列模型

Compositional time series frequently exhibit structural breaks due to external shocks, policy changes, or market disruptions. Standard methods either ignore such breaks or handle them through fixed effects that cannot extrapolate beyond the sample, or step-function dummies that impose instantaneous adjustment. We develop a Bayesian Dirichlet ARMA model augmented with a directional-shift intervention mechanism that captures structural breaks through three interpretable…

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Uncertainty quantification and multi-stage variable selection for personalized treatment regimes

个性化治疗方案的贝叶斯不确定性量化与多阶段变量选择

A dynamic treatment regime is a sequence of medical decisions that adapts to the evolving clinical status of a patient over time. To facilitate personalized care, it is crucial to assess the probability of each available treatment option being optimal for a specific patient, while also identifying the key prognostic factors that determine the optimal sequence of treatments. This task has become increasingly challenging due to the growing number of individual prognostic…

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Semiparametric Bayesian Difference-in-Differences

半参数贝叶斯双重差分

This paper studies semiparametric Bayesian inference for the average treatment effect on the treated (ATT) within the difference-in-differences (DiD) research design. We propose two new Bayesian methods with frequentist validity. The first one is the semiparametric Bayesian outcome regression, where we place a Gaussian process prior on the conditional mean function of the control group. The second method is a doubly robust Bayesian procedure that adjusts the prior…

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Quasi-maximum likelihood estimation for scalable ARMA models

可扩展 ARMA 模型的拟极大似然估计

The recently proposed scalable ARMA model preserves the parsimony of traditional VARMA models while achieving greater computational tractability. However, existing studies are limited to regularized least squares estimation (LSE) for high-dimensional settings, which is not only statistically less efficient but also requires the sub-Gaussian assumption for its theoretical guarantees. Moreover, it still lacks inference tool for real applications. To fill this gap, we develop a…

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LMT: A Bayesian Framework for Causal Discovery from Textual Alarm Records in Manufacturing Systems

LMT:从制造系统文本告警记录发现因果关系的贝叶斯框架

Textual event records, such as alarm logs, have become an increasingly common data source in engineering and manufacturing systems. Beyond identifying correlations or recurring patterns, engineers are often interested in understanding which types of events causally trigger or influence other events during system operation. Textual event descriptions may contain semantic clues about such causal relationships, and recent large language models (LLMs) provide a promising tool…

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Identification of Information Structures in Bayesian Games

贝叶斯博弈中信息结构的识别

To what extent can an external observer infer the underlying information structure from an equilibrium action distribution in an incomplete-information game? We investigate this question in a general linear-quadratic-Gaussian framework. A simple class of canonical information structures is offered and proves rich enough to rationalize any equilibrium action distribution that can arise under an arbitrary information structure. Moreover, this class is parsimonious in the sense…

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Evolution as a Process of Causal Inference

作为因果推断过程的进化

Recently, the mapping of the replicator equation onto Bayes' theorem has been recognised, leading to an analogy between evolutionary dynamics and Bayesian learning. However, this analogy holds only for pure selection in infinite populations and breaks down when mutations -- a central mechanism of evolution -- are introduced. Here I propose that evolution by natural selection, at least for populations of haploid replicators in static environments, is best understood not as a…

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Causal Preference Elicitation

因果偏好征询

We propose causal preference elicitation, a Bayesian framework for expert-in-the-loop causal discovery that actively queries local edge relations to concentrate a posterior over directed acyclic graphs (DAGs). From any black-box observational posterior, we model noisy expert judgments with a three-way likelihood over edge existence and direction. Posterior inference uses a flexible particle approximation, and queries are selected by an efficient expected information gain…

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Robust Predictive Uncertainty and Double Descent in Contaminated Bayesian Random Features

污染贝叶斯随机特征中的稳健预测不确定性与双下降

We propose a robust Bayesian formulation of random feature (RF) regression that accounts explicitly for prior and likelihood misspecification via Huber-style contamination sets. Starting from the classical equivalence between ridge-regularized RF training and Bayesian inference with Gaussian priors and likelihoods, we replace the single prior and likelihood with $ε$- and $η$-contaminated credal sets, respectively, and perform inference using pessimistic generalized Bayesian…

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A Bayesian adaptive enrichment design using aggregate historical data to inform individualized treatment recommendations

利用历史汇总数据支持个体化治疗建议的贝叶斯自适应富集设计

Adaptive enrichment trials aim to identify and recruit participants most likely to benefit from treatment based on evolving biomarker evidence, with the goal of informing individualized treatment recommendations. Bayesian methods are well suited to these designs because they allow external information to be incorporated in a principled manner. In practice, prior studies often provide only summary-level information, with subgroup-specific estimates unavailable due to design…

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Interventional Processes for Causal Uncertainty Quantification

用于因果不确定性量化的干预过程

Reliable uncertainty quantification for causal effects is crucial in high-stakes applications, but remains challenging when the target is an entire function rather than a scalar estimand. In this work, we introduce a GP-based approach for uncertainty quantification of interventional functions. The central idea is to build on recent work representing interventional functions as an inner-product of observational functions in a reproducing kernel Hilbert space (RKHS), by…

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Methods for adjusting for covariate measurement error in flexible modelling of functional form: designing a blinded, controlled neutral comparison simulation study

函数形式灵活建模中协变量测量误差校正方法:一项盲法、受控的中立比较模拟研究设计

This article describes the design of a neutral comparison study in the context of empirical studies where the interest is in learning the functional relationship between a continuous errorprone exposure variable and a binary outcome. The performance of combinations of measurement error correction methods and flexible regression modeling techniques was compared using a simulation study. The project involved four independent teams, one devoted to data generation and…

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General Seemingly Unrelated Local Projections

广义似不相关局部投影

We develop a flexible framework for Bayesian estimation of impulse responses using Local Projections (LPs) with instrumental variables. It accommodates multiple shocks and instruments, accounts for autocorrelation in multi-step forecasts by jointly modeling all LPs as a seemingly unrelated system of equations, defines a flexible yet parsimonious joint prior for impulse responses based on a Gaussian Process, and allows for joint inference about the entire vector of impulse…

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Simultaneous estimation of the effective reproduction number and the time series of daily infections: Application to Covid-19

有效再生数与每日感染时间序列的联合估计:新冠应用

The time-varying effective reproduction number is an important parameter for communication and policy decisions during an epidemic. In this paper, we present new statistical methods for estimating the reproduction number based on the popular model of \citet{cori2013new} which defines the effective reproduction number based on self-exciting dynamics of new infections. Such a model is conceptually simple and less susceptible to misspecifications than more complicated…

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PliableBVS: A flexible Bayesian variable selection method for modeling interactions with mandatory modifying variables

PliableBVS:为含强制修饰变量的交互建模设计的灵活贝叶斯变量选择方法

High-dimensional interaction models are useful for studying, for example, how a large set of variables of interest, such as gene expression or other omics features, interact with a smaller set of modifying variables, such as clinical covariates. In this context, the pliable lasso has recently been proposed as an efficient method for screening large numbers of potential interaction terms under an asymmetric weak hierarchical constraint. In this work, we extend this framework…

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B-MASTER: Scalable Bayesian Multivariate Regression for Master Predictor Discovery in Colorectal Cancer Microbiome-Metabolite Profiles

B-MASTER:用于结直肠癌微生物组-代谢物谱主预测因子发现的可扩展贝叶斯多元回归

Motivation: The gut microbiome shapes cancer therapy response through its influence on host metabolism. While prior studies examine pairwise associations between individual genera and metabolites, there is limited methodology for identifying microbial genera that systematically regulate the overall metabolome. Scalable statistical tools are needed to uncover such system-level 'master predictors' in high-dimensional microbiome-metabolome data. Results: We introduce B-MASTER,…

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A theory of generalised coordinates for stochastic differential equations

随机微分方程的广义坐标理论

Stochastic differential equations are ubiquitous modelling tools in physics and the sciences. In most modelling scenarios, random fluctuations driving dynamics or motion have some non-trivial temporal correlation structure, which renders the SDE non-Markovian; a phenomenon commonly known as ``colored'' noise. Thus, an important objective is to develop effective tools for mathematically and numerically studying (possibly non-Markovian) SDEs. In this report, we formalise a…

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Stabilised weighted data subsampling for accelerated inference in models with recursive likelihoods

递归似然模型加速推断的稳定化加权子抽样

Inference for models with recursively defined likelihoods is computationally demanding, limiting scalability to large datasets. We propose a stabilised weighted subsampling methodology for accelerated inference based on an unbiased estimator of the log-likelihood. By assigning higher sampling probabilities to early observations, the method reduces the effective depth of recursive likelihood evaluations and hence computational cost. However, sampling probabilities that decay…

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Individual Shrinkage for Random Effects

随机效应的个体化收缩估计

This paper develops an approach to random effects estimation and individual-level forecasting in micropanels that targets individual accuracy rather than aggregate performance. The conventional shrinkage methods used in the literature, such as the James-Stein estimator and Empirical Bayes, target aggregate performance and can lead to inaccurate decisions at the individual level. We propose a class of shrinkage estimators with individual weights (IW) that leverage an…

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Digital Maturity and Technical Efficiency in NHS Acute Trusts: Cross-Sectional Evidence from England

英国 NHS 急性医院的数字成熟度与技术效率:英格兰横截面证据

Whether investment in digital health technology is associated with differences in hospital productivity is a question of substantial policy relevance, yet interpretation is constrained by challenges in causal identification and prior evidence is mixed. Technical efficiency in NHS acute hospital trusts in England is estimated using Bayesian stochastic frontier analysis. A four-input Cobb--Douglas production function incorporating clinical full-time equivalents, administrative…

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Non-Vacuous Certification of Transport MCMC via Oscillation-Controlled Normalizing Flows

基于振荡控制归一化流的传输MCMC非空验证

Transport MCMC trains a normalizing flow to precondition Metropolis--Hastings proposals, achieving high empirical efficiency on challenging posteriors; yet no prior work produces a numerically non-vacuous, rigorous spectral-gap bound for such samplers. We establish the first such bounds. For independence MH on the banana family we certify (γ^\ast = 0.828) at (D = 2) (covering in the original space) and (γ^\ast \ge 7.6\times 10^{-4}) at (D = 5) (covering in an analytically…

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Posterior and Likelihood Sensitivity in Bayesian Distributionally Robust Optimization

贝叶斯分布稳健优化中的后验与似然敏感度

We introduce the notion of worst-case posterior and worst-case likelihood sensitivity. These measure, respectively, the sensitivity of the expected cost to worst-case perturbations of the posterior distribution and worst-case perturbations of the likelihood of a Bayesian model. Each defines a quantitative measure of robustness. A decision maker concerned about the sensitivity of the out-of-sample expected cost to deviations from her assumptions will want a decision for which…

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