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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Bayesian joint modelling using semiparametric accelerated failure time approaches

基于半参数加速失效时间模型的贝叶斯联合建模

Longitudinal clinical studies often collect repeated measurements of biomarkers or health-related quality of life together with a time-to-event outcome. These processes are intrinsically linked: longitudinal trajectories may predict event risk, while event occurrence, or its anticipation, can induce informative censoring of the longitudinal process. Joint models provide a principled framework for handling this dependence, but most existing formulations rely on proportional…

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Assumption-Lean Shrinkage and Model Averaging for Spatial Parameters

弱模型依赖的空间参数收缩与模型平均

Economic decisions often depend on many noisy estimates of quantities such as neighborhood effects, school quality, and hospital performance. Shrinkage estimation can improve decisions by pooling information across related units, but geography, adjacency, and shared characteristics each define a different notion of relatedness, and each implies a different way of pooling. We treat the choice of relatedness as part of the estimation problem, using Stein's Unbiased Risk…

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Information Gap and Feasibility-Aware Inference in Binomial Logistic Mixtures

二项逻辑混合模型中的信息差距与可行性感知推断

This paper studies the information gap between mixture detection and label recovery in binomial logistic mixtures. Standard likelihood-based criteria such as the Bayesian information criterion (BIC) can detect the presence of two components, but this does not guarantee that the corresponding labels are recoverable. We show that this gap is intrinsic to binomial logistic mixtures with a fixed number of trials: observed-data evidence for mixture structure and per-observation…

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Discrete Choice and Competitive Reactions: End-to-End Simulation with the R Package cash

离散选择与竞争反应:R 包 cash 的端到端模拟

Although discrete choice (choice-based conjoint) analysis has become a widely used technique for the elicitation of consumer preferences and hence a foundation for product design, to the best of our knowledge, there exists neither free and open-source nor commercial software that covers the game-theoretic simulation of competitive reactions among firms based on discrete choice models to improve decision making beyond traditional product (line) optimization. The R package…

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A Bayesian Functional Accelerated Failure-Time Model with Varying Effects Correcting for Measurement Error

校正测量误差的变效应贝叶斯函数型加速失效时间模型

Functional data collected as continuously observed trajectories arise naturally in many biomedical settings, and a key inferential goal is understanding how such functional covariates relate to time-to-event outcomes while allowing that relationship to vary across subgroups defined by scalar characteristics. Existing frequentist approaches to functional accelerated failure-time (AFT) models struggle to flexibly capture the joint, nonlinear influence of scalar covariates and…

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Fast Posterior Sampling in Tightly Identified SVARs Using 'Soft' Sign Restrictions

利用“软”符号限制加速紧识别 SVAR 的后验抽样

We propose algorithms for conducting Bayesian inference in structural vector autoregressions identified using sign restrictions. The key feature of our approach is a sampling step based on 'soft' sign restrictions. This step draws from a target density that smoothly penalises parameter values that violate the restrictions, facilitating the use of computationally efficient Markov chain Monte Carlo sampling algorithms. An importance-sampling step yields draws conditional on…

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Decision Theory for the Archetype Discovery Problem

原型发现问题的决策理论

In the archetype discovery problem a researcher wants to summarize N heterogeneous policy effects of interest that vary over a discrete set of covariates. The goal is to partition the set of covariates into K<N groups -- the archetype sets -- and to provide a summary of the policy effects for each group. We use decision theory to show that, under a weighted mean-squared-error criterion, a procedure analogous to the Sorted Group Average Treatment Effects (GATES) solves the…

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On the design distribution for predictive Bayesian regression

预测式贝叶斯回归中的设计分布

The predictive approach to Bayesian inference accesses the posterior distribution via a sequence of one-step-ahead predictives, enabling inference via predictive resampling without Markov chain Monte Carlo. In the random-design regression setting, an explicit specification of the predictive design distribution is required, yet the impact of this choice has received little formal attention. We study the role of this predictive design distribution in parametric martingale…

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Bayesian Penalized Transformation Models: Structured Additive Location-Scale Regression for Arbitrary Conditional Distributions

贝叶斯惩罚变换模型:面向任意条件分布的结构化可加位置—尺度回归

Penalized transformation models (PTMs) are a semiparametric location-scale regression family that estimate a response's conditional distribution directly from the data, and model the location and scale through structured additive predictors. The core of the model is a monotonically increasing transformation function that relates the response distribution to a reference distribution. The transformation function is equipped with a smoothness prior that regularizes how much the…

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Forecasting with Bayesian Panel Vector Autoregressions Using the R Package bpvars

使用 R 包 bpvars 的贝叶斯面板向量自回归预测

The R package bpvars was designed to forecast employment, unemployment, and labour market participation rates of 189 countries. However, it is generally applicable to dynamic panel data due to the flexibility of its modelling framework and robust coding. It includes a family of Bayesian hierarchical panel Vector Autoregressions (VARs) that are characterised by: (i) country-specific VAR models (ii) with their parameters' priors centred around their global counterparts, and…

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Semiparametric Bayesian inference for causal mediation in cluster randomized trials

整群随机试验中因果中介效应的半参数贝叶斯推断

Cluster randomized trials (CRTs) are frequently used to evaluate interventions, yet conducting causal mediation analysis in these settings remains challenging, particularly when the mediator is measured at the cluster level and the number of clusters is small. Standard inference methods often rely on asymptotic assumptions that fail in finite-sample settings, leading to biased variance estimation and invalid confidence intervals. In this paper, we propose a robust inference…

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A scalable Bayesian double machine learning framework, with application to racial disproportionality assessment

可扩展的贝叶斯双重机器学习框架及其在种族比例失衡评估中的应用

Racial disproportionality in stop and search practices elicits substantial concerns about its societal and behavioral impacts. In London, Black individuals are about four times more likely to be stopped and searched than White individuals. Using data on stop and search events in London from January 2019 to December 2023, this paper aims to investigate disproportionality in the volume of stops for expressive crimes involving Black individuals compared to other ethnicities. We…

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Sensitivity analysis for causal mediation: bridge score, sharp sensitivity bounds, and calibration

因果中介敏感性分析:桥接得分、尖锐敏感性界限与校准

Causal mediation analysis decomposes the total treatment effect into a portion operating through a hypothesized mediator and a residual direct portion. Identification of natural direct and indirect effects typically rests on the mediator stage of sequential ignorability, which cannot be empirically verified and requires explicit sensitivity analysis. We formulate the \emph{bridge score}, a mediator-stage balancing score, as a low-dimensional vector formed from the two…

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ShrinkageTrees: An R Package for Bayesian Tree Ensembles for Survival Analysis and Causal Inference

ShrinkageTrees:用于生存分析与因果推断的贝叶斯树集成 R 包

ShrinkageTrees is an R package for Bayesian tree ensembles in survival analysis and causal inference. The package implements Bayesian additive regression tree models for right- and interval-censored survival outcomes within an accelerated failure time (AFT) framework, with optional decomposition into prognostic and treatment-effect components for causal inference. Two complementary forms of regularisation are available: regularisation of the tree structure, via…

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Compressed Bayesian Tensor Regression

压缩贝叶斯张量回归

To address the common problem of high dimensionality in tensor regressions, we introduce a generalized tensor random projection method that embeds high-dimensional tensor-valued covariates into low-dimensional subspaces with minimal loss of information about the responses. The method is flexible, allowing for tensor-wise, mode-wise, or combined random projections as special cases. A Bayesian inference framework is provided featuring the use of a hierarchical prior…

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Symmetry-Aware Convex Shrinkage for High-Dimensional Covariance Estimation

对称性感知的高维协方差凸收缩估计

We develop a class of data-adaptive shrinkage estimators for high-dimensional covariance estimation in which the shrinkage target is a Reynolds projection of the sample covariance under a finite symmetry group selected from a candidate library by held-out predictive performance. The class generalizes the convex shrinkage estimator of Ledoit and Wolf by replacing the scalar-identity target with a structured target derived from a symmetry group when one is available, and…

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Bayesian Dynamic Factor Models for High-Dimensional Matrix-Valued Time Series

高维矩阵值时间序列的贝叶斯动态因子模型

We introduce a class of Bayesian dynamic factor models for matrix-valued time series, with autoregressive factor dynamics and idiosyncratic components that allow stochastic volatility, outliers, and a Kronecker-structured covariance capturing cross-row and cross-column correlation. Exploiting the matrix structure, we make these richly parameterized models tractable in high dimensions and develop an efficient Gibbs sampler for estimation. For model comparison, we propose a…

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A Flexible Approach to Augmenting a Bayesian VAR with Nonlinear Factors

以非线性因子扩展贝叶斯 VAR 的灵活方法

This paper proposes a vector autoregression augmented with nonlinear factors that are modeled nonparametrically using regression trees. There are four main advantages of our model. First, the use of factor methods ensures that departures from linearity are modeled parsimoniously. In particular, they exhibit functional pooling where a small number of nonlinear factors are used to model common nonlinearities across variables. Second, modeling potential nonlinearities…

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Methods for adjusting for covariate measurement error in flexible modelling of functional form: results of a blinded, controlled neutral comparison simulation study

函数形式灵活建模中协变量测量误差的校正方法:一项盲法、受控的中立比较模拟研究

Covariate measurement error is pervasive in epidemiological research and distorts estimated exposure-outcome associations, yet correction methods have been studied almost exclusively under linear modelling assumptions. Their behaviour when the underlying association is non-linear and is itself estimated with flexible regression, remains poorly characterised. We report a blinded, multi-stage neutral comparison simulation study, conducted within the STRATOS initiative,…

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Robust high-dimensional Bayesian regression with non-Gaussian errors under global--local shrinkage priors

非高斯误差下全局-局部收缩先验的稳健高维贝叶斯回归

Multivariate regression with many correlated responses and predictors commonly violates Gaussian error assumptions due to heavy tails, outliers, and asymmetry. Gaussian procedures then lose efficiency in coefficient estimation and produce biased estimates of conditional dependence graphs. We develop a robust Bayesian framework using a scale-location mixture error distribution and horseshoe+ global-local priors on both the regression coefficients and off-diagonals of the…

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Supervised Low-Rank Structure Discovery for Developmental Epigenetic Aging in Ultra-High-Dimensional DNA Methylation Data

超高维DNA甲基化数据中发育表观遗传衰老的监督低秩结构发现

Ultra-high-dimensional array-based CpG methylation studies require statistical frameworks that simultaneously provide supervised structure discovery, interpretability, scalable latent-dimension identification, and computational feasibility. We propose SOLAR (Supervised Orthogonal Low-rank Adaptive Regression), a supervised low-rank latent-factor framework for identifying CpG-level methylation structure associated with residualized DNAm age. SOLAR combines orthogonal low-rank…

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A Tractable Unified Skew-t Distribution and Its Copula for Heterogeneous Asymmetries

适用于异质非对称性的可计算统一偏斜t分布及其Copula

Multivariate distributions that allow for asymmetry and heavy tails are important building blocks in many econometric and statistical models. The Unified Skew-t (UST) is a promising choice because it is both scalable and allows for a high level of flexibility in the asymmetry in the distribution. However, it suffers from parameter identification and computational hurdles that have to date inhibited its use for modeling data. In this paper we propose a new tractable variant…

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Robustly estimating heterogeneity in factorial data using Rashomon Partitions

利用 Rashomon 分区稳健估计因子组合数据中的异质性

In both observational data and randomized control trials, researchers select statistical models to articulate how the outcome of interest varies with combinations of observable covariates. Choosing a model that is too simple can obfuscate important heterogeneity in outcomes between covariate groups, while too much complexity risks identifying spurious patterns. In this paper, we propose a novel Bayesian framework for model uncertainty called Rashomon Partition Sets (RPSs).…

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Learning Collapsed Patterns in Compositional Data: A Bayesian Heterogeneous Relative-Shift Approach

成分数据中的坍缩模式学习:贝叶斯异质相对偏移方法

Relative-shift regression provides a principled framework for modeling compositional covariates by quantifying how the response changes when mass is reallocated from one component to another. Yet many emerging compositional data problems extend beyond this classical setting, involving high-dimensional predictors and regression effects that vary across latent subpopulations. This complexity poses a dual challenge unmet by existing methods: recovering latent cluster structure…

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