A Bayesian Semiparametric Model for Random-Effects Meta-Analysis
随机效应元分析的贝叶斯半参数模型AI 解读 ↓
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随机效应元分析的贝叶斯半参数模型AI 解读 ↓
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In meta-analysis, there is an increasing trend to explicitly acknowledge the presence of study variability through random-effects models. That is, one assumes that for each study there is a study-specific effect and one is observing an estimate of this latent variable. In a random-effects model, one assumes that these study-specific effects come from some distribution, and one can estimate the parameters of this distribution, as well as the study-specific effects themselves. This distribution is most often modeled through a parametric family, usually a family of normal distributions. The advantage of using a normal distribution is that the mean parameter plays an important role, and much of the focus is on determining whether or not this mean is 0. For example, it may be easier to justify funding further studies if it is determined that this mean is not 0. Typically, this normality assumption is made for the sake of convenience, rather than from some theoretical justification, and may not actually hold. We present a Bayesian model in which the distribution of the study-specific effects is modeled through a certain class of nonparametric priors. These priors can be designed to concentrate most of their mass around the family of normal distributions but still allow for any other distribution. The priors involve a univariate parameter that plays the role of the mean parameter in the normal model, and they give rise to robust inference about this parameter. We present a Markov chain algorithm for estimating the posterior distributions under the model. Finally, we give two illustrations of the use of the model.
贝叶斯加性回归树的稳健半参数推断
Bayesian additive regression trees (BART) provide a class of flexible nonparametric regressions in machine learning. Their rich tree-based structure can generate non-Donsker classes of regression functions. We study posterior inference for the population mean under missing at random. We derive a new Bernstein-von Mises (BvM) theorem showing that even a one-step posterior based on BART and Bayesian-bootstrap reweighting retains a non-negligible bias term in the non-Donsker…
半参数高维时间序列关系图的贝叶斯学习
Time series data arising in many applications nowadays are high-dimensional. A large number of parameters describe features of these time series. We propose a novel approach to modeling a high-dimensional time series through several independent univariate time series, which are then orthogonally rotated and sparsely linearly transformed. With this approach, any specified intrinsic relations among component time series given by a graphical structure can be maintained at all…
随机干预效应的校准贝叶斯推断
Causal inference increasingly extends beyond classical causal effects defined by deterministic treatment assignments, such as the average treatment effect, to stochastic intervention effects that can weaken positivity requirements and offer greater policy relevance. Nonparametric Bayesian models are attractive for estimating these effects due to their flexibility and inherent uncertainty propagation, but this posterior uncertainty need not be well calibrated for the causal…
采用局部—全局收缩的非正态变换有向无环图半参数贝叶斯结构学习
Bayesian structure learning of directed acyclic graphs (DAGs) is central to high-dimensional causal discovery, yet existing methods mostly assume multivariate Gaussian data, which is routinely violated by measurements displaying heavy tails, skewness, or bounded support. We address this by introducing NPN-DAG-HS, a fully Bayesian semiparametric DAG model coupling the nonparanormal family with horseshoe shrinkage on Cholesky off-diagonals via an extended-rank likelihood. This…
Cox 模型的半参数 Fiducial 推断
Abstract R.A. Fisher introduced the fiducial distribution as a potential replacement for the Bayesian posterior distribution in the 1930s. During the past century, fiducial approaches have been explored in various parametric and nonparametric settings. However, to the best of our knowledge, no fiducial inference has been developed in the realm of semiparametric statistics. In this paper, we propose a novel fiducial approach for semiparametric models. In memory of Sir David…
BayesFBHborrow:基于灵活基线风险的生存数据贝叶斯信息借用 R 包
Statistical methods that leverage external trial information to help accelerate drug development are becoming increasingly popular. Bayesian methods facilitate dynamic borrowing, where the similarity of the response guides how much information is used. We have proposed a semiparametric Bayesian borrowing model for time-to-event data, with smoothing priors that allows the baseline hazard to take any form via an ensemble average. By accurately modelling the baseline hazard,…