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Variable selection in high-dimensional linear models: partially faithful distributions and the PC-simple algorithm

高维线性模型的变量选择:部分忠实性与 PC-simple 算法

We consider variable selection in high-dimensional linear models where the number of covariates greatly exceeds the sample size. We introduce the new concept of partial faithfulness and use it to infer associations between the covariates and the response. Under partial faithfulness, we develop a simplified version of the pc algorithm (Spirtes et al., 2000), which is computationally feasible even with thousands of covariates and provides consistent variable selection under…

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On Selection of Spatial Linear Models for Lattice Data

格点数据空间线性模型的选择

Summary Spatial linear models are popular for the analysis of data on a spatial lattice, but statistical techniques for selection of covariates and a neighbourhood structure are limited. Here we develop new methodology for simultaneous model selection and parameter estimation via penalized maximum likelihood under a spatial adaptive lasso. A computationally efficient algorithm is devised for obtaining approximate penalized maximum likelihood estimates. Asymptotic properties…

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Adaptive estimation of stationary Gaussian fields

平稳高斯场的自适应估计

We study the nonparametric covariance estimation of a stationary Gaussian field X observed on a regular lattice. In the time series setting, some procedures like AIC are proved to achieve optimal model selection among autoregressive models. However, there exists no such equivalent results of adaptivity in a spatial setting. By considering collections of Gaussian Markov random fields (GMRF) as approximation sets for the distribution of X, we introduce a novel model selection…

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High-dimensional Ising model selection using ℓ1-regularized logistic regression

利用 ℓ1 正则化逻辑回归选择高维 Ising 模型

We consider the problem of estimating the graph associated with a binary Ising Markov random field. We describe a method based on ℓ1-regularized logistic regression, in which the neighborhood of any given node is estimated by performing logistic regression subject to an ℓ1-constraint. The method is analyzed under high-dimensional scaling in which both the number of nodes p and maximum neighborhood size d are allowed to grow as a function of the number of observations n. Our…

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Simultaneous Confidence Bands for Penalized Spline Estimators

惩罚样条估计的同时置信带

In this article we construct simultaneous confidence bands for a smooth curve using penalized spline estimators. We consider three types of estimation methods: (a) as a standard (fixed effect) nonparametric model, (b) using the mixed-model framework with the spline coefficients as random effects, and (c) a full Bayesian approach. The volume-of-tube formula is applied for the first two methods and compared with Bayesian simultaneous confidence bands from a frequentist…

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A Framework for Feature Selection in Clustering

聚类中的特征选择框架

We consider the problem of clustering observations using a potentially large set of features. One might expect that the true underlying clusters present in the data differ only with respect to a small fraction of the features, and will be missed if one clusters the observations using the full set of features. We propose a novel framework for sparse clustering, in which one clusters the observations using an adaptively chosen subset of the features. The method uses a…

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Grouping Pursuit Through a Regularization Solution Surface

通过正则化解曲面追寻预测变量分组

Extracting grouping structure or identifying homogenous subgroups of predictors in regression is crucial for high-dimensional data analysis. A low-dimensional structure in particular-grouping, when captured in a regression model, enables to enhance predictive performance and to facilitate a model's interpretability Grouping pursuit extracts homogenous subgroups of predictors most responsible for outcomes of a response. This is the case in gene network analysis, where…

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Nearly unbiased variable selection under minimax concave penalty

极小极大凹惩罚下的近无偏变量选择

We propose MC+, a fast, continuous, nearly unbiased and accurate method of penalized variable selection in high-dimensional linear regression. The LASSO is fast and continuous, but biased. The bias of the LASSO may prevent consistent variable selection. Subset selection is unbiased but computationally costly. The MC+ has two elements: a minimax concave penalty (MCP) and a penalized linear unbiased selection (PLUS) algorithm. The MCP provides the convexity of the penalized…

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Reduced Rank Mixed Effects Models for Spatially Correlated Hierarchical Functional Data

空间相关层级函数数据的降秩混合效应模型

Hierarchical functional data are widely seen in complex studies where sub-units are nested within units, which in turn are nested within treatment groups. We propose a general framework of functional mixed effects model for such data: within unit and within sub-unit variations are modeled through two separate sets of principal components; the sub-unit level functions are allowed to be correlated. Penalized splines are used to model both the mean functions and the principal…

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Variable Selection With the Strong Heredity Constraint and Its Oracle Property

具有强遗传约束的变量选择及其预言性质

In this paper, we extend the LASSO method (Tibshirani 1996) for simultaneously fitting a regression model and identifying important interaction terms. Unlike most of the existing variable selection methods, our method automatically enforces the heredity constraint, that is, an interaction term can be included in the model only if the corresponding main terms are also included in the model. Furthermore, we extend our method to generalized linear models, and show that it…

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Regularized Reconstruction of Wave Height and Slope Fields From Refracted Images of Water

从水体折射图像正则化重建波高与坡度场

Refractive imaging of wave fields in an established experimental technique. We consider the associated reconstruction problem and investigate some statistically motivated refinements, including (a) bias correction of local slope estimates, (b) regularization of directional slopes, (c) spatially weighted reconstruction using the estimated variability of local slope estimates, and (d) more accurate estimates of reference light profiles from time sequence data. These…

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High-Dimensional Variable Selection for Survival Data

生存数据的高维变量选择

The minimal depth of a maximal subtree is a dimensionless order statistic measuring the predictiveness of a variable in a survival tree. We derive the distribution of the minimal depth and use it for high-dimensional variable selection using random survival forests. In big p and small n problems (where p is the dimension and n is the sample size), the distribution of the minimal depth reveals a “ceiling effect” in which a tree simply cannot be grown deep enough to properly…

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Regularization Parameter Selections via Generalized Information Criterion

通过广义信息准则选择正则化参数

We apply the nonconcave penalized likelihood approach to obtain variable selections as well as shrinkage estimators. This approach relies heavily on the choice of regularization parameter, which controls the model complexity. In this paper, we propose employing the generalized information criterion (GIC), encompassing the commonly used Akaike information criterion (AIC) and Bayesian information criterion (BIC), for selecting the regularization parameter. Our proposal makes a…

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Regularization in kernel learning

核学习中的正则化

Under mild assumptions on the kernel, we obtain the best known error rates in a regularized learning scenario taking place in the corresponding reproducing kernel Hilbert space (RKHS). The main novelty in the analysis is a proof that one can use a regularization term that grows significantly slower than the standard quadratic growth in the RKHS norm.

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Asymptotic efficiency and finite-sample properties of the generalized profiling estimation of parameters in ordinary differential equations

常微分方程参数广义剖面估计的渐近效率与有限样本性质

Ordinary differential equations (ODEs) are commonly used to model dynamic behavior of a system. Because many parameters are unknown and have to be estimated from the observed data, there is growing interest in statistics to develop efficient estimation procedures for these parameters. Among the proposed methods in the literature, the generalized profiling estimation method developed by Ramsay and colleagues is particularly promising for its computational efficiency and good…

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Sparse Partial Least Squares Regression for Simultaneous Dimension Reduction and Variable Selection

同时降维与变量选择的稀疏偏最小二乘回归

Summary Partial least squares regression has been an alternative to ordinary least squares for handling multicollinearity in several areas of scientific research since the 1960s. It has recently gained much attention in the analysis of high dimensional genomic data. We show that known asymptotic consistency of the partial least squares estimator for a univariate response does not hold with the very large p and small n paradigm. We derive a similar result for a multivariate…

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Stochastic model specification search for Gaussian and partial non-Gaussian state space models

高斯与部分非高斯状态空间模型的随机设定搜索

Model specification for state space models is a difficult task as one has to decide which components to include in the model and to specify whether these components are fixed or time-varying. To this aim a new model space MCMC method is developed in this paper. It is based on extending the Bayesian variable selection approach which is usually applied to variable selection in regression models to state space models. For non-Gaussian state space models stochastic model search…

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'Generalized method of moments estimation for linear regression with clustered failure time data'

聚类失效时间线性回归的广义矩估计:引文更正

Although Qu et al. (2000) was cited in § 1 of our paper, it should also have been mentioned as the source of the basis representation of the inverse correlation matrix following our equation (3). Moreover our Theorem 3 rests on arguments similar to those leading to Theorem 1 of Qu et al. (2000). We thank Dr Qu for pointing this out. ‘A group bridge approach for variable selection’ BY JIAN HUANG, SHUANGGE MA, HUILIANG XIE AND CUN-HUI ZHANG [email protected][email…

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A note on automatic variable selection using smooth-threshold estimating equations

利用平滑阈值估计方程自动选择变量

This paper develops smooth-threshold estimating equations that can automatically eliminate irrelevant parameters by setting them as zero. The resulting estimator enjoys the oracle property in the sense of Fan & Li (2001), even in estimators for which the covariance assumption of Wang & Leng (2007) is violated, such as the Buckley--James estimator. Furthermore, the estimator can be obtained without solving a convex optimization problem. A bic -type criterion for tuning…

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Bias reduction in exponential family nonlinear models

指数族非线性模型中的偏差缩减

In Firth (1993, Biometrika) it was shown how the leading term in the asymptotic bias of the maximum likelihood estimator is removed by adjusting the score vector, and that in canonical-link generalized linear models the method is equivalent to maximizing a penalized likelihood that is easily implemented via iterative adjustment of the data. Here a more general family of bias-reducing adjustments is developed for a broad class of univariate and multivariate generalized…

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Bayesian lasso regression

贝叶斯 lasso 回归

The lasso estimate for linear regression corresponds to a posterior mode when independent, double-exponential prior distributions are placed on the regression coefficients. This paper introduces new aspects of the broader Bayesian treatment of lasso regression. A direct characterization of the regression coefficients’ posterior distribution is provided, and computation and inference under this characterization is shown to be straightforward. Emphasis is placed on point…

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High-dimensional additive modeling

高维加性建模

We propose a new sparsity-smoothness penalty for high-dimensional generalized additive models. The combination of sparsity and smoothness is crucial for mathematical theory as well as performance for finite-sample data. We present a computationally efficient algorithm, with provable numerical convergence properties, for optimizing the penalized likelihood. Furthermore, we provide oracle results which yield asymptotic optimality of our estimator for high dimensional but…

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Estimation of trend in state-space models: Asymptotic mean square error and rate of convergence

状态空间模型中的趋势估计:渐近均方误差与收敛速度

The focus of this paper is on trend estimation for a general state-space model Yt=μt+ɛt, where the dth difference of the trend {μt} is assumed to be i.i.d., and the error sequence {ɛt} is assumed to be a mean zero stationary process. A fairly precise asymptotic expression of the mean square error is derived for the estimator obtained by penalizing the dth order differences. Optimal rate of convergence is obtained, and it is shown to be “asymptotically equivalent” to a…

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Sparsistency and rates of convergence in large covariance matrix estimation

大型协方差矩阵估计的稀疏一致性与收敛速度

This paper studies the sparsistency and rates of convergence for estimating sparse covariance and precision matrices based on penalized likelihood with nonconvex penalty functions. Here, sparsistency refers to the property that all parameters that are zero are actually estimated as zero with probability tending to one. Depending on the case of applications, sparsity priori may occur on the covariance matrix, its inverse or its Cholesky decomposition. We study these three…

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