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Comment: FDP vs FDR and the Effect of Conditioning

评论:错误发现比例、错误发现率与条件化的影响

Accurate estimation of the false discovery proportion (FDP) and false discovery rate (FDR) is a problem that has been eagerly waiting for a solution. Fan, Han and Gu have found one. They have achieved this by both clarifying the concept of the problem and providing a feasible algorithmic solution. In this comment, I discuss some of the central concepts involving FDP and its estimation via conditioning in contrast with the estimators by Efron (2007) and Friguet et al. (2009).

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Mode Identification of Volatility in Time-Varying Autoregression

时变自回归模型中波动方差函数的峰数识别

In many applications, time series exhibit nonstationary behavior that might reasonably be modeled as a time-varying autoregressive (AR) process. In the context of such a model, we discuss the problem of testing for modality of the variance function. We propose a test of modality that is local and, when used iteratively, can be used to identify the total number of modes in a given series. This problem is closely related to peak detection and identification, which has…

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Estimating False Discovery Proportion Under Arbitrary Covariance Dependence

任意协方差依赖下的错误发现比例估计

Multiple hypothesis testing is a fundamental problem in high dimensional inference, with wide applications in many scientific fields. In genome-wide association studies, tens of thousands of tests are performed simultaneously to find if any SNPs are associated with some traits and those tests are correlated. When test statistics are correlated, false discovery control becomes very challenging under arbitrary dependence. In the current paper, we propose a novel method based…

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Mixed Effects Designs: The Symmetry Assumption and Missing Data

混合效应设计:对称性假设与缺失数据

The classical F test for the hypothesis of no main fixed effects in the two-way crossed mixed effects design is derived under model assumptions that include normality, variance homogeneity, and symmetry. The symmetry assumption specifies that the random main and interaction effects are independent. While it is known that the F test is robust against violations of the normality assumption and/or the homoscedasticity assumption in the balanced case, the effects of the symmetry…

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Generalized Measures of Correlation for Asymmetry, Nonlinearity, and Beyond

刻画非对称性与非线性的广义相关度量

Applicability of Pearson's correlation as a measure of explained variance is by now well understood. One of its limitations is that it does not account for asymmetry in explained variance. Aiming to develop broad applicable correlation measures, we study a pair of generalized measures of correlation (GMC) that deals with asymmetries in explained variances, and linear or nonlinear relations between random variables. We present examples under which the paired measures are…

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The Hybrid Wild Bootstrap for Time Series

时间序列的混合野生自助法

We introduce a new and simple bootstrap procedure for general linear processes, called the hybrid wild bootstrap. The hybrid wild bootstrap generates frequency domain replicates of the periodogram that imitate asymptotically correct the first- and second-order properties of the ordinary periodogram including its weak dependence structure at different frequencies. As a consequence, the hybrid wild bootstrapped periodogram succeeds in approximating consistently the…

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Inference on the Order of a Normal Mixture

正态混合模型成分数的推断

Finite normal mixture models are used in a wide range of applications. Hypothesis testing on the order of the normal mixture is an important yet unsolved problem. Existing procedures often lack a rigorous theoretical foundation. Many are also hard to implement numerically. In this article, we develop a new method to fill the void in this important area. An effective expectation-maximization (EM) test is invented for testing the null hypothesis of arbitrary order m 0 under a…

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Searching for Alternative Splicing With a Joint Model on Probe Measurability and Expression Intensities

联合建模探针可测性与表达强度以检测可变剪接

The exon tiling array offers a high throughput technology to search for aberrant splicing in biomedical research, but few methods of analysis for splicing detection have been tested both statistically and empirically. Noisy measurements on nonresponsive probe selection regions and outlying intensities at some of the samples tend to distort model-based assessments. We propose a robust analysis of variance approach that incorporates an informative model on probe measurability…

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A Multiscale Community Blockmodel for Network Exploration

用于网络探索的多尺度社区块模型

Real world networks exhibit a complex set of phenomena such as underlying hierarchical organization, multiscale interaction, and varying topologies of communities. Most existing methods do not adequately capture the intrinsic interplay among such phenomena. We propose a nonparametric Multiscale Community Blockmodel (MSCB) to model the generation of hierarchies in social communities, selective membership of actors to subsets of these communities, and the resultant networks…

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Pair Copula Constructions for Multivariate Discrete Data

多元离散数据的成对 Copula 构造

Multivariate discrete response data can be found in diverse fields, including econometrics, finance, biometrics, and psychometrics. Our contribution, through this study, is to introduce a new class of models for multivariate discrete data based on pair copula constructions (PCCs) that has two major advantages. First, by deriving the conditions under which any multivariate discrete distribution can be decomposed as a PCC, we show that discrete PCCs attain highly flexible…

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Composite Partial Likelihood Estimation Under Length-Biased Sampling, With Application to a Prevalent Cohort Study of Dementia

长度偏倚抽样下的复合偏似然估计:痴呆患病队列应用

The Canadian Study of Health and Aging (CSHA) employed a prevalent cohort design to study survival after onset of dementia, where patients with dementia were sampled and the onset time of dementia was determined retrospectively. The prevalent cohort sampling scheme favors individuals who survive longer. Thus, the observed survival times are subject to length bias. In recent years, there has been a rising interest in developing estimation procedures for prevalent cohort…

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Bayesian Spatio-Dynamic Modeling in Cell Motility Studies: Learning Nonlinear Taxic Fields Guiding the Immune Response

细胞运动的贝叶斯时空动态建模:学习引导免疫反应的非线性趋性场

Ioanna Manolopouloua, Melanie P. Matheub, Michael D. Cahalanb, Mike Westa & Thomas B. Keplerc a Department of Statistical Science , Duke University , Durham , NC , 27708 b Department of Physiology and Biophysics, School of Medicine , University of California , Irvine , CA , 92697 c Department of Microbiology , Boston University School of Medicine , Boston , MA , 02118 We develop and analyze models of the spatio-temporal organization of lymphocytes in the lymph nodes and…

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Multivariate high‐frequency‐based volatility (HEAVY) models

基于高频数据的多元波动率HEAVY模型

SUMMARY This paper introduces a new class of multivariate volatility models that utilizes high‐frequency data. We discuss the models' dynamics and highlight their differences from multivariate generalized autoregressive conditional heteroskedasticity (GARCH) models. We also discuss their covariance targeting specification and provide closed‐form formulas for multi‐step forecasts. Estimation and inference strategies are outlined. Empirical results suggest that the HEAVY model…

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Testing distributional assumptions: A GMM aproach

检验分布假设:一种GMM方法

SUMMARY We consider testing distributional assumptions by using moment conditions. A general class of moment conditions satisfied under the null hypothesis is derived and connected to existing moment‐based tests. The approach is simple and easy to implement, yet reasonably powerful. In addition, we provide moment tests that are robust against parameter estimation error uncertainty in the general case which includes the case of serial correlation. In particular, we consider…

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On the forecasting accuracy of multivariate GARCH models

多元 GARCH 模型的预测准确性

SUMMARY This paper addresses the question of the selection of multivariate generalized autoregressive conditional heteroskedastic (GARCH) models in terms of variance matrix forecasting accuracy, with a particular focus on relatively large‐scale problems. We consider 10 assets from the New York Stock Exchange and compare 125 models based 1‐, 5‐ and 20‐day‐ahead conditional variance forecasts over a period of 10 years using the model confidence set (MCS) and the superior…

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Counterfactual analyses with graphical models based on local independence

基于局部独立图模型的反事实分析

We show that one can perform causal inference in a natural way for continuous-time scenarios using tools from stochastic analysis. This provides new alternatives to the positivity condition for inverse probability weighting. The probability distribution that would govern the frequency of observations in the counterfactual scenario can be characterized in terms of a so-called martingale problem. The counterfactual and factual probability distributions may be related through a…

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High-dimensional semiparametric Gaussian copula graphical models

高维半参数高斯 Copula 图模型

We propose a semiparametric approach called the nonparanormal SKEPTIC for efficiently and robustly estimating high-dimensional undirected graphical models. To achieve modeling flexibility, we consider the nonparanormal graphical models proposed by Liu, Lafferty and Wasserman [J. Mach. Learn. Res. 10 (2009) 2295–2328]. To achieve estimation robustness, we exploit nonparametric rank-based correlation coefficient estimators, including Spearman’s rho and Kendall’s tau. We prove…

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Consistency of community detection in networks under degree-corrected stochastic block models

度数修正随机区块模型下网络社区检测的一致性

Community detection is a fundamental problem in network analysis, with applications in many diverse areas. The stochastic block model is a common tool for model-based community detection, and asymptotic tools for checking consistency of community detection under the block model have been recently developed. However, the block model is limited by its assumption that all nodes within a community are stochastically equivalent, and provides a poor fit to networks with hubs or…

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Asymptotically optimal parameter estimation under communication constraints

通信约束下渐近最优的参数估计

A parameter estimation problem is considered, in which dispersed sensors transmit to the statistician partial information regarding their observations. The sensors observe the paths of continuous semimartingales, whose drifts are linear with respect to a common parameter. A novel estimating scheme is suggested, according to which each sensor transmits only one-bit messages at stopping times of its local filtration. The proposed estimator is shown to be consistent and, for a…

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Discussion: Latent variable graphical model selection via convex optimization

讨论:通过凸优化选择潜变量图模型

I want to start by congratulating Professors Chandrasekaran, Parrilo and Willsky for this fine piece of work.Their paper, hereafter referred to as CPW, addresses one of the biggest practical challenges of Gaussian graphical models-how to make inferences for a graphical model in the presence of missing variables.The difficulty comes from the fact that the validity of conditional independence relationships implied by a graphical model relies critically on the assumption that…

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Generalized fiducial inference for normal linear mixed models

正态线性混合模型的广义 fiducial 推断

While linear mixed modeling methods are foundational concepts introduced in any statistical education, adequate general methods for interval estimation involving models with more than a few variance components are lacking, especially in the unbalanced setting. Generalized fiducial inference provides a possible framework that accommodates this absence of methodology. Under the fabric of generalized fiducial inference along with sequential Monte Carlo methods, we present an…

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Variable selection in linear mixed effects models

线性混合效应模型中的变量选择

This paper is concerned with the selection and estimation of fixed and random effects in linear mixed effects models. We propose a class of nonconcave penalized profile likelihood methods for selecting and estimating important fixed effects. To overcome the difficulty of unknown covariance matrix of random effects, we propose to use a proxy matrix in the penalized profile likelihood. We establish conditions on the choice of the proxy matrix and show that the proposed…

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Needles and Straw in a Haystack: Posterior concentration for possibly sparse sequences

大海捞针:可能稀疏序列的后验集中

We consider full Bayesian inference in the multivariate normal mean model in the situation that the mean vector is sparse. The prior distribution on the vector of means is constructed hierarchically by first choosing a collection of nonzero means and next a prior on the nonzero values. We consider the posterior distribution in the frequentist set-up that the observations are generated according to a fixed mean vector, and are interested in the posterior distribution of the…

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Mean and autocovariance function estimation near the boundary of stationarity

平稳边界附近的均值与自协方差函数估计

We analyze the applicability of standard normal asymptotic theory for linear process models near the boundary of stationarity. Limit results are given for estimation of the mean, autocovariance and autocorrelation functions within the broad region of stationarity that includes near boundary cases which vary with the sample size. The rate of consistency and the validity of the normal asymptotic approximation for the corresponding estimators is determined both by the sample…

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