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Estimating and Testing Vaccine Sieve Effects Using Machine Learning

利用机器学习估计和检验疫苗筛效应

When available, vaccines are an effective means of disease prevention. Unfortunately, efficacious vaccines have not yet been developed for several major infectious diseases, including HIV and malaria. Vaccine sieve analysis studies whether and how the efficacy of a vaccine varies with the genetics of the pathogen of interest, which can guide subsequent vaccine development and deployment. In sieve analyses, the effect of the vaccine on the cumulative incidence corresponding…

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Inferring Brain Signals Synchronicity From a Sample of EEG Readings

从脑电读数样本推断脑信号同步性

Inferring patterns of synchronous brain activity from a heterogeneous sample of electroencephalograms (EEG) is scientifically and methodologically challenging. While it is intuitively and statistically appealing to rely on readings from more than one individual in order to highlight recurrent patterns of brain activation, pooling information across subjects presents non-trivial methodological problems. We discuss some of the scientific issues associated with the…

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A Geometric Perspective on the Power of Principal Component Association Tests in Multiple Phenotype Studies

多表型研究中主成分关联检验功效的几何视角

Joint analysis of multiple phenotypes can increase statistical power in genetic association studies. Principal component analysis, as a popular dimension reduction method, especially when the number of phenotypes is high dimensional, has been proposed to analyze multiple correlated phenotypes. It has been empirically observed that the first PC, which summarizes the largest amount of variance, can be less powerful than higher-order PCs and other commonly used methods in…

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Combined Hypothesis Testing on Graphs With Applications to Gene Set Enrichment Analysis

图上的组合假设检验及其在基因集富集分析中的应用

Motivated by gene set enrichment analysis, we investigate the problem of combined hypothesis testing on a graph. A general framework is introduced to make effective use of the structural information of the underlying graph when testing multivariate means. A new testing procedure is proposed within this framework, and shown to be optimal in that it can consistently detect departures from the collective null at a rate that no other test could improve, for almost all graphs. We…

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Invariant Causal Prediction for Sequential Data

序贯数据的不变因果预测

We investigate the problem of inferring the causal predictors of a response Y from a set of d explanatory variables (X1, …, Xd). Classical ordinary least-square regression includes all predictors that reduce the variance of Y. Using only the causal predictors instead leads to models that have the advantage of remaining invariant under interventions; loosely speaking they lead to invariance across different “environments” or “heterogeneity patterns.” More precisely, the…

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Selection-Corrected Statistical Inference for Region Detection With High-Throughput Assays

高通量检测中区域识别的选择校正统计推断

Scientists use high-dimensional measurement assays to detect and prioritize regions of strong signal in spatially organized domain. Examples include finding methylation enriched genomic regions using microarrays, and active cortical areas using brain-imaging. The most common procedure for detecting potential regions is to group neighboring sites where the signal passed a threshold. However, one needs to account for the selection bias induced by this procedure to avoid…

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Proper Inference for Value Function in High-Dimensional Q-Learning for Dynamic Treatment Regimes

Dynamic treatment regimes are a set of decision rules and each treatment decision is tailored over time according to patients' responses to previous treatments as well as covariate history. There is a growing interest in development of correct statistical inference for optimal dynamic treatment regimes to handle the challenges of non-regularity problems in the presence of non-respondents who have zero-treatment effects, especially when the dimension of the tailoring…

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Quantile-Regression Inference With Adaptive Control of Size

自适应控制检验尺寸的分位数回归推断

Regression quantiles have asymptotic variances that depend on the conditional densities of the response variable given regressors. This article develops a new estimate of the asymptotic variance of regression quantiles that leads any resulting Wald-type test or confidence region to behave as well in large samples as its infeasible counterpart in which the true conditional response densities are embedded. We give explicit guidance on implementing the new variance estimator to…

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Estimation and Identification of a Varying-Coefficient Additive Model for Locally Stationary Processes

局部平稳过程变系数可加模型的估计与模型识别

The additive model and the varying-coefficient model are both powerful regression tools, with wide practical applications. However, our empirical study on a financial data has shown that both of these models have drawbacks when applied to locally stationary time series. For the analysis of functional data, Zhang and Wang have proposed a flexible regression method, called the varying-coefficient additive model (VCAM), and presented a two-step spline estimation method.…

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Toward Computerized Efficient Estimation in Infinite-Dimensional Models

迈向无限维模型中的计算机化有效估计

Despite the risk of misspecification they are tied to, parametric models continue to be used in statistical practice because they are simple and convenient to use. In particular, efficient estimation procedures in parametric models are easy to describe and implement. Unfortunately, the same cannot be said of semiparametric and nonparametric models. While the latter often reflect the level of available scientific knowledge more appropriately, performing efficient inference in…

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Semiparametric Regression Analysis of Multiple Right- and Interval-Censored Events

多个右删失与区间删失事件的半参数回归分析

Health sciences research often involves both right- and interval-censored events because the occurrence of a symptomatic disease can only be observed up to the end of follow-up, while the occurrence of an asymptomatic disease can only be detected through periodic examinations. We formulate the effects of potentially time-dependent covariates on the joint distribution of multiple right- and interval-censored events through semiparametric proportional hazards models with…

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New Tests for Equality of Several Covariance Functions for Functional Data

多个函数总体协方差函数相等性的新检验

In this article, we propose two new tests for the equality of the covariance functions of several functional populations, namely, a quasi-GPF test and a quasi-Fmax test whose test statistics are obtained via globalizing a pointwise quasi-F-test statistic with integration and taking its supremum over some time interval of interest, respectively. Unlike several existing tests, they are scale-invariant in the sense that their test statistics will not change if we multiply each…

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Covariate-Adjusted Regression for Distorted Longitudinal Data With Informative Observation Times

信息性观测时点下畸变纵向数据的协变量调整回归

In many longitudinal studies, repeated response and predictors are not directly observed, but can be treated as distorted by unknown functions of a common confounding covariate. Moreover, longitudinal data involve an observation process which may be informative with a longitudinal response process in practice. To deal with such complex data, we propose a class of flexible semiparametric covariate-adjusted joint models. The new models not only allow for the longitudinal…

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A Bayesian Hierarchical Summary Receiver Operating Characteristic Model for Network Meta-Analysis of Diagnostic Tests

诊断试验网络荟萃分析的贝叶斯层级汇总ROC模型

In studies evaluating the accuracy of diagnostic tests, three designs are commonly used, crossover, randomized, and non-comparative. Existing methods for meta-analysis of diagnostic tests mainly consider the simple cases in which the reference test in all or none of the studies can be considered a gold standard test, and in which all studies use either a randomized or non-comparative design. The proliferation of diagnostic instruments and the diversity of study designs…

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Factor and Idiosyncratic Empirical Processes

因子成分与特异成分的经验过程

The distributions of the common and idiosyncratic components for an individual variable are important in forecasting and applications. However, they are not identified with low-dimensional observations. Using the recently developed theory for large dimensional approximate factor model for large panel data, the common and idiosyncratic components can be estimated consistently. Based on the estimated common and idiosyncratic components, we construct the empirical processes for…

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Frequentist Consistency of Variational Bayes

变分贝叶斯的频率学一致性

A key challenge for modern Bayesian statistics is how to perform scalable inference of posterior distributions. To address this challenge, variational Bayes (VB) methods have emerged as a popular alternative to the classical Markov chain Monte Carlo (MCMC) methods. VB methods tend to be faster while achieving comparable predictive performance. However, there are few theoretical results around VB. In this article, we establish frequentist consistency and asymptotic normality…

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Robust Bayesian Inference via Coarsening

通过粗化实现稳健贝叶斯推断

The standard approach to Bayesian inference is based on the assumption that the distribution of the data belongs to the chosen model class. However, even a small violation of this assumption can have a large impact on the outcome of a Bayesian procedure. We introduce a novel approach to Bayesian inference that improves robustness to small departures from the model: rather than conditioning on the event that the observed data are generated by the model, one conditions on the…

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Meta-Analysis of Mid- p -Values: Some New Results based on the Convex Order

基于凸序的 mid-p 值元分析新结果

The mid-p-value is a proposed improvement on the ordinary p-value for the case where the test statistic is partially or completely discrete. In this case, the ordinary p-value is conservative, meaning that its null distribution is larger than a uniform distribution on the unit interval, in the usual stochastic order. The mid-p-value is not conservative. However, its null distribution is dominated by the uniform distribution in a different stochastic order, called the convex…

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Semiparametric Smooth Coefficient Stochastic Frontier Model With Panel Data

面板数据半参数平滑系数随机前沿模型

We investigate the semiparametric smooth coefficient stochastic frontier model for panel data in which the distribution of the composite error term is assumed to be of known form but depends on some environmental variables. We propose multi-step estimators for the smooth coefficient functions as well as the parameters of the distribution of the composite error term and obtain their asymptotic properties. The Monte Carlo study demonstrates that the proposed estimators perform…

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A Bootstrap Stationarity Test for Predictive Regression Invalidity

检验预测回归无效性的自助法平稳性检验

In order for predictive regression tests to deliver asymptotically valid inference, account has to be taken of the degree of persistence of the predictors under test. There is also a maintained assumption that any predictability in the variable of interest is purely attributable to the predictors under test. Violation of this assumption by the omission of relevant persistent predictors renders the predictive regression invalid, and potentially also spurious, as both the…

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Multiple Regression Model Averaging and the Focused Information Criterion With an Application to Portfolio Choice

多元回归模型平均与聚焦信息准则:投资组合选择应用

We consider multiple regression (MR) model averaging using the focused information criterion (FIC). Our approach is motivated by the problem of implementing a mean-variance portfolio choice rule. The usual approach is to estimate parameters ignoring the intention to use them in portfolio choice. We develop an estimation method that focuses on the trading rule of interest. Asymptotic distributions of submodel estimators in the MR case are derived using a localization…

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Testing Censoring Point Independence

删失点独立性的检验

Identification in censored regression analysis and hazard models of duration outcomes relies on the condition that censoring points are conditionally independent of latent outcomes, an assumption which may be questionable in many settings. This article proposes a test for this assumption based on a Cramer–von-Mises-like test statistic comparing two different nonparametric estimators for the latent outcome cdf: the Kaplan–Meier estimator, and the empirical cdf conditional on…

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Inference on Filtered and Smoothed Probabilities in Markov-Switching Autoregressive Models

马尔可夫转换自回归模型中滤波与平滑概率的推断

We derive a statistical theory that provides useful asymptotic approximations to the distributions of the single inferences of filtered and smoothed probabilities, derived from time series characterized by Markov-switching dynamics. We show that the uncertainty in these probabilities diminishes when the states are separated, the variance of the shocks is low, and the time series or the regimes are persistent. As empirical illustrations of our approach, we analyze the U.S.…

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Permutation Tests for Comparing Inequality Measures

比较不平等指标的置换检验

Asymptotic and bootstrap tests for inequality measures are known to perform poorly in finite samples when the underlying distribution is heavy-tailed. We propose Monte Carlo permutation and bootstrap methods for the problem of testing the equality of inequality measures between two samples. Results cover the Generalized Entropy class, which includes Theil’s index, the Atkinson class of indices, and the Gini index. We analyze finite-sample and asymptotic conditions for the…

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