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PLEMT: A Novel Pseudolikelihood-Based EM Test for Homogeneity in Generalized Exponential Tilt Mixture Models

PLEMT:广义指数倾斜混合模型的拟似然 EM 同质性检验

Motivated by analyses of DNA methylation data, we propose a semiparametric mixture model, namely the generalized exponential tilt mixture model, to account for heterogeneity between differentially methylated and non-differentially methylated subjects in the cancer group, and capture the differences in higher order moments (e.g. mean and variance) between subjects in cancer and normal groups. A pairwise pseudolikelihood is constructed to eliminate the unknown nuisance…

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Network Reconstruction From High-Dimensional Ordinary Differential Equations

从高维常微分方程重建网络

We consider the task of learning a dynamical system from high-dimensional time-course data. For instance, we might wish to estimate a gene regulatory network from gene expression data measured at discrete time points. We model the dynamical system nonparametrically as a system of additive ordinary differential equations. Most existing methods for parameter estimation in ordinary differential equations estimate the derivatives from noisy observations. This is known to be…

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Variable Selection in Kernel Regression Using Measurement Error Selection Likelihoods

利用测量误差选择似然进行核回归变量选择

This paper develops a nonparametric shrinkage and selection estimator via the measurement error selection likelihood approach recently proposed by Stefanski, Wu, and White. The Measurement Error Kernel Regression Operator (MEKRO) has the same form as the Nadaraya-Watson kernel estimator, but optimizes a measurement error model selection likelihood to estimate the kernel bandwidths. Much like LASSO or COSSO solution paths, MEKRO results in solution paths depending on a tuning…

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The Hamming Ball Sampler

汉明球采样器

We introduce the Hamming ball sampler, a novel Markov chain Monte Carlo algorithm, for efficient inference in statistical models involving high-dimensional discrete state spaces. The sampling scheme uses an auxiliary variable construction that adaptively truncates the model space allowing iterative exploration of the full model space. The approach generalizes conventional Gibbs sampling schemes for discrete spaces and provides an intuitive means for user-controlled balance…

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A Class of Non-Gaussian State Space Models With Exact Likelihood Inference

一类可进行精确似然推断的非高斯状态空间模型

The likelihood function of a general nonlinear, non-Gaussian state space model is a high-dimensional integral with no closed-form solution. In this article, I show how to calculate the likelihood function exactly for a large class of non-Gaussian state space models that include stochastic intensity, stochastic volatility, and stochastic duration models among others. The state variables in this class follow a nonnegative stochastic process that is popular in econometrics for…

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Nonasymptotic analysis of semiparametric regression models with high-dimensional parametric coefficients

高维参数系数半参数回归模型的非渐近分析

We consider a two-step projection based Lasso procedure for estimating a partially linear regression model where the number of coefficients in the linear component can exceed the sample size and these coefficients belong to the $l_{q}$-“balls” for $q\in[0,1]$. Our theoretical results regarding the properties of the estimators are nonasymptotic. In particular, we establish a new nonasymptotic “oracle” result: Although the error of the nonparametric projection per se (with…

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On the contraction properties of some high-dimensional quasi-posterior distributions

若干高维拟后验分布的收缩性质

We study the contraction properties of a quasi-posterior distribution $\check{\Pi}_{n,d}$ obtained by combining a quasi-likelihood function and a sparsity inducing prior distribution on $\mathbb{R}^{d}$, as both $n$ (the sample size), and $d$ (the dimension of the parameter) increase. We derive some general results that highlight a set of sufficient conditions under which $\check{\Pi}_{n,d}$ puts increasingly high probability on sparse subsets of $\mathbb{R}^{d}$, and…

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Detection and feature selection in sparse mixture models

稀疏混合模型中的检测与特征选择

We consider Gaussian mixture models in high dimensions, focusing on the twin tasks of detection and feature selection. Under sparsity assumptions on the difference in means, we derive minimax rates for the problems of testing and of variable selection. We find these rates to depend crucially on the knowledge of the covariance matrices and on whether the mixture is symmetric or not. We establish the performance of various procedures, including the top sparse eigenvalue of the…

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Phase transitions for high dimensional clustering and related problems

高维聚类及相关问题的相变

Consider a two-class clustering problem where we observe $X_{i}=\ell_{i}\mu+Z_{i}$, $Z_{i}\stackrel{\mathit{i.i.d.}}{\sim}N(0,I_{p})$, $1\leq i\leq n$. The feature vector $\mu\in R^{p}$ is unknown but is presumably sparse. The class labels $\ell_{i}\in\{-1,1\}$ are also unknown and the main interest is to estimate them. We are interested in the statistical limits. In the two-dimensional phase space calibrating the rarity and strengths of useful features, we find the precise…

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False discoveries occur early on the Lasso path

Lasso 路径上的错误发现会较早出现

In regression settings where explanatory variables have very low correlations and there are relatively few effects, each of large magnitude, we expect the Lasso to find the important variables with few errors, if any. This paper shows that in a regime of linear sparsity—meaning that the fraction of variables with a nonvanishing effect tends to a constant, however small—this cannot really be the case, even when the design variables are stochastically independent. We…

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Sparse CCA: Adaptive estimation and computational barriers

稀疏典型相关分析:自适应估计与计算障碍

Canonical correlation analysis is a classical technique for exploring the relationship between two sets of variables. It has important applications in analyzing high dimensional datasets originated from genomics, imaging and other fields. This paper considers adaptive minimax and computationally tractable estimation of leading sparse canonical coefficient vectors in high dimensions. Under a Gaussian canonical pair model, we first establish separate minimax estimation rates…

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Minimax estimation of a functional on a structured high-dimensional model

结构化高维模型中泛函的极小极大估计

We introduce a new method of estimation of parameters in semiparametric and nonparametric models. The method employs $U$-statistics that are based on higher-order influence functions of the parameter of interest, which extend ordinary linear influence functions, and represent higher derivatives of this parameter. For parameters for which the representation cannot be perfect the method often leads to a bias-variance trade-off, and results in estimators that converge at a…

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Gaussian approximation for high dimensional time series

高维时间序列的高斯近似

We consider the problem of approximating sums of high dimensional stationary time series by Gaussian vectors, using the framework of functional dependence measure. The validity of the Gaussian approximation depends on the sample size $n$, the dimension $p$, the moment condition and the dependence of the underlying processes. We also consider an estimator for long-run covariance matrices and study its convergence properties. Our results allow constructing simultaneous…

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Sparse estimation of huge networks with a block‐wise structure

具有分块结构的超大网络稀疏估计

Networks with a very large number of nodes appear in many application areas and pose challenges for traditional Gaussian graphical modelling approaches. In this paper, we focus on the estimation of a Gaussian graphical model when the dependence between variables has a block‐wise structure. We propose a penalized likelihood estimation of the inverse covariance matrix, also called Graphical LASSO, applied to block averages of observations, and we derive its asymptotic…

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Uncertainty quantification under group sparsity

组稀疏性下的不确定性量化

Quantifying the uncertainty in penalized regression under group sparsity is an important open question. We establish, under a high-dimensional scaling, the asymptotic validity of a modified parametric bootstrap method for the group lasso, assuming a Gaussian error model and mild conditions on the design matrix and the true coefficients. Simulation of bootstrap samples provides simultaneous inferences on large groups of coefficients. Through extensive numerical comparisons,…

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Robust reduced-rank regression

稳健降秩回归

Summary In high-dimensional multivariate regression problems, enforcing low rank in the coefficient matrix offers effective dimension reduction, which greatly facilitates parameter estimation and model interpretation. However, commonly used reduced-rank methods are sensitive to data corruption, as the low-rank dependence structure between response variables and predictors is easily distorted by outliers. We propose a robust reduced-rank regression approach for joint…

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Random-projection Ensemble Classification

随机投影集成分类

Summary We introduce a very general method for high dimensional classification, based on careful combination of the results of applying an arbitrary base classifier to random projections of the feature vectors into a lower dimensional space. In one special case that we study in detail, the random projections are divided into disjoint groups, and within each group we select the projection yielding the smallest estimate of the test error. Our random-projection ensemble…

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Change Point Estimation in High Dimensional Markov Random-Field Models

高维马尔可夫随机场模型的变点估计

Summary The paper investigates a change point estimation problem in the context of high dimensional Markov random-field models. Change points represent a key feature in many dynamically evolving network structures. The change point estimate is obtained by maximizing a profile penalized pseudolikelihood function under a sparsity assumption. We also derive a tight bound for the estimate, up to a logarithmic factor, even in settings where the number of possible edges in the…

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EigenPrism: Inference for High Dimensional Signal-to-Noise Ratios

EigenPrism:高维信噪比推断

Summary Consider the following three important problems in statistical inference: constructing confidence intervals for the error of a high dimensional (p > n) regression estimator, the linear regression noise level and the genetic signal-to-noise ratio of a continuous-valued trait (related to the heritability). All three problems turn out to be closely related to the little-studied problem of performing inference on the l2-norm of the signal in high dimensional linear…

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Inferences in panel data with interactive effects using large covariance matrices

利用大型协方差矩阵对交互效应面板模型进行推断

We consider efficient estimation of panel data models with interactive effects, which relies on a high-dimensional inverse covariance matrix estimator. By using a consistent estimator of the error covariance matrix, we can take into account both cross-sectional correlations and heteroskedasticity. In the presence of cross-sectional correlations, the proposed estimator eliminates the cross-sectional correlation bias, and is more efficient than the existing methods. The rate…

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Efficient estimation of factor models with time and cross‐sectional dependence

兼具时间与横截面依赖的因子模型的有效估计

Summary This paper studies the efficient estimation of large‐dimensional factor models with both time and cross‐sectional dependence assuming ( N , T ) separability of the covariance matrix. The asymptotic distribution of the estimator of the factor and factor‐loading space under factor stationarity is derived and compared to that of the principal component (PC) estimator. The paper also considers the case when factors exhibit a unit root. We provide feasible estimators and…

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Sharp detection in PCA under correlations: All eigenvalues matter

相关结构下PCA的精细检测:所有特征值都重要

Principal component analysis (PCA) is a widely used method for dimension reduction. In high-dimensional data, the “signal” eigenvalues corresponding to weak principal components (PCs) do not necessarily separate from the bulk of the “noise” eigenvalues. Therefore, popular tests based on the largest eigenvalue have little power to detect weak PCs. In the special case of the spiked model, certain tests asymptotically equivalent to linear spectral statistics (LSS)—averaging…

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Tests for separability in nonparametric covariance operators of random surfaces

随机曲面非参数协方差算子的可分离性检验

The assumption of separability of the covariance operator for a random image or hypersurface can be of substantial use in applications, especially in situations where the accurate estimation of the full covariance structure is unfeasible, either for computational reasons, or due to a small sample size. However, inferential tools to verify this assumption are somewhat lacking in high-dimensional or functional data analysis settings, where this assumption is most relevant. We…

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Set-Based Tests for the Gene–Environment Interaction in Longitudinal Studies

纵向研究中基因与环境交互的集合检验

We propose a generalized score type test for set-based inference for gene-environment interaction with longitudinally measured quantitative traits. The test is robust to misspecification of within subject correlation structure and has enhanced power compared to existing alternatives. Unlike tests for marginal genetic association, set-based tests for gene-environment interaction face the challenges of a potentially misspecified and high-dimensional main effect model under the…

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