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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Valid Bayesian Estimation of the Cointegrating Error Correction Model

协整误差修正模型的有效贝叶斯估计

linear restrictions and the nonlinear method of Johansen's maximum likelihood procedure. That the linear method can produce invalid estimates while the Johansen approach always produces valid estimates has been recognized in several recent articles. Because all Bayesian studies to date have used linear restrictions, this article presents a Bayesian method for obtaining estimates of cointegrating vectors that will always be valid. In addition, it also presents an approach for…

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Nonparametric Applications of Bayesian Inference

贝叶斯推断的非参数应用

Bayesian inference by presenting two applications. Our first application considers an educational choice problem. We focus on obtaining a predictive distribution for earnings corresponding to various levels of schooling. This predictive distribution incorporates the parameter uncertainty, so that it is relevant for decision making under uncertainty in the expected utility framework of microeconomics. The second application is to quantile regression. Our point here is to…

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A new Bayesian method for nonparametric capture-recapture models in presence of heterogeneity

存在异质性时非参数捕获—再捕获模型的新贝叶斯方法

The intrinsic heterogeneity of individuals is a potential source of bias in estimation procedures for capture‐recapture models. To account for this heterogeneity in the model a hierarchical structure has been proposed whereby the probabilities that each animal is caught on a single occasion are modelled as independent draws from a common unknown distribution F. However, there is general agreement that modelling F by a simple parametric curve may lead to unsatisfactory…

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Bayesian model discrimination for multiple strata capture-recapture data

多层捕获—再捕获数据的贝叶斯模型判别

Extending the work of Dupuis (1995), we motivate a range of biologically plausible models for multiple‐site capture‐recapture and show how the original Gibbs sampling algorithm of Dupuis can be extended to obtain posterior model probabilities using reversible jump Markov chain Monte Carlo. This model selection procedure improves upon previous analyses in two distinct ways. First, Bayesian model averaging provides a robust parameter estimation technique which properly…

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Bayesian inference for the uncertainty distribution of computer model outputs

计算机模型输出不确定性分布的贝叶斯推断

We consider a problem of inference for the output of a computationally expensive computer model. We suppose that the model is to be used in a context where the values of one or more inputs are uncertain, so that the input configuration is a random variable. We require to make inference about the induced distribution of the output. This distribution is called the uncertainty distribution, and the general problem is known to users of computer models as uncertainty analysis. To…

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Asymptotic approximations to posterior distributions via conditional moment equations

通过条件矩方程渐近逼近后验分布

We consider asymptotic approximations to joint posterior distributions in situations where the full conditional distributions referred to in Gibbs sampling are asymptotically normal. Our development focuses on problems where data augmentation facilitates simpler calculations, but results hold more generally. Asymptotic mean vectors are obtained as simultaneous solutions to fixed point equations that arise naturally in the development. Asymptotic covariance matrices flow…

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Parsimonious Covariance Matrix Estimation for Longitudinal Data

纵向数据的简约协方差矩阵估计

This article proposes a data-driven method to identify parsimony in the covariance matrix of longitudinal data and to exploit any such parsimony to produce a statistically efficient estimator of the covariance matrix. The approach parameterizes the covariance matrix through the Cholesky decomposition of its inverse. For longitudinal data, this is a one-step-ahead predictive representation, and the Cholesky factor is likely to have off-diagonal elements that are zero or close…

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Independent and Identically Distributed Monte Carlo Algorithms for Semiparametric Linear Mixed Models

半参数线性混合模型的独立同分布蒙特卡洛算法

Hybrid versions of independent and identically distributed weighted Chinese restaurant (WCR) algorithms are developed for inference in semiparametric linear mixed models under minimal assumptions for the random-effects distributions. The WCR method of working with the posterior partition structure leads to Rao–Blackwell estimates for higher-order moments of random effects, such as skewness and kurtosis, and can be used to estimate densities for random effects. A key feature…

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Latent Space Approaches to Social Network Analysis

社会网络分析的潜在空间方法

Network models are widely used to represent relational information among interacting units. In studies of social networks, recent emphasis has been placed on random graph models where the nodes usually represent individual social actors and the edges represent the presence of a specified relation between actors. We develop a class of models where the probability of a relation between actors depends on the positions of individuals in an unobserved “social space.” We make…

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Discovering Combinations of Genomic Aberrations Associated With Cancer

发现与癌症相关的基因组异常组合

This article introduces a model-based statistical methodology for the analysis of copy-number variations in cancer genomes measured by comparative genomic hybridization. The methodology allows one to infer combinations of genomic aberrations associated with the cancer phenotype. The stochastic model conjoins two features of cancer biology to infuse some context into an otherwise unsupervised learning problem. It asserts random genomic instability in a potential progenitor…

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The Law of Large Demand for Information

信息大需求定律

An unresolved problem in Bayesian decision theory is how to value and price information. This paper resolves both problems assuming inexpensive information. Building on Large Deviation Theory, we produce a generically complete asymptotic order on samples of i.i.d. signals in finite-state, finite-action models. Computing the marginal value of an additional signal, we find it is eventually exponentially falling in quantity, and higher for lower quality signals. We provide a…

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Particle Filtering for Partially Observed Gaussian State Space Models

部分观测高斯状态空间模型的粒子滤波

Summary Solving Bayesian estimation problems where the posterior distribution evolves over time through the accumulation of data has many applications for dynamic models. A large number of algorithms based on particle filtering methods, also known as sequential Monte Carlo algorithms, have recently been proposed to solve these problems. We propose a special particle filtering method which uses random mixtures of normal distributions to represent the posterior distributions…

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Perfect Samplers for Mixtures of Distributions

混合分布的完美采样器

Summary We consider the construction of perfect samplers for posterior distributions associated with mixtures of exponential families and conjugate priors, starting with a perfect slice sampler in the spirit of Mira and co-workers. The methods rely on a marginalization akin to Rao–Blackwellization and illustrate the duality principle of Diebolt and Robert. A first approximation embeds the finite support distribution on the latent variables within a continuous support…

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Bayesian Phylogenetic Inference from Animal Mitochondrial Genome Arrangements

基于动物线粒体基因组排列的贝叶斯系统发育推断

Summary The determination of evolutionary relationships is a fundamental problem in evolutionary biology. Genome arrangement data are potentially more informative than deoxyribonucleic acid sequence data for inferring evolutionary relationships between distantly related taxa. We describe a Bayesian framework for phylogenetic inference from mitochondrial genome arrangement data using Markov chain Monte Carlo methods. We apply the method to assess evolutionary relationships…

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Modelling Spatially Correlated Data via Mixtures: A Bayesian Approach

通过混合模型刻画空间相关数据:贝叶斯方法

Summary The paper develops mixture models for spatially indexed data. We confine attention to the case of finite, typically irregular, patterns of points or regions with prescribed spatial relationships, and to problems where it is only the weights in the mixture that vary from one location to another. Our specific focus is on Poisson-distributed data, and applications in disease mapping. We work in a Bayesian framework, with the Poisson parameters drawn from gamma priors,…

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Bayesian Measures of Model Complexity and Fit

模型复杂度与拟合的贝叶斯度量

Summary We consider the problem of comparing complex hierarchical models in which the number of parameters is not clearly defined. Using an information theoretic argument we derive a measure pD for the effective number of parameters in a model as the difference between the posterior mean of the deviance and the deviance at the posterior means of the parameters of interest. In general pD approximately corresponds to the trace of the product of Fisher's information and the…

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Single observation unbiased priors

单观测无偏先验

This paper studies a class of default priors, which we call single observation unbiased priors (SOUP). A prior for a parameter is a SOUP if the corresponding posterior mean of the parameter based on a single observation is an unbiased estimator of the parameter. We prove that, under mild regularity conditions, a default prior for a convolution parameter is "noninformative" in the sense of yielding a posterior inference invariant under amalgamation only if it is a SOUP.…

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Asymptotic normality with small relative errors of posterior probabilities of half-spaces

半空间后验概率的小相对误差渐近正态近似

Let $\Theta$ be a parameter space included in a finite-dimensional Euclidean space and let $A$ be a half-space. Suppose that the maximum likelihood estimate $\theta_n$ of $\theta$ is not in $A$ (otherwise, replace $A$ by its complement) and let $\Delta$ be the maximum log likelihood (at $\theta_n$) minus the maximum log likelihood over the boundary $\partial A$. It is shown that under some conditions, uniformly over all half-spaces $A$, either the posterior probability of $A$…

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Predictive Variable Selection in Generalized Linear Models

广义线性模型中的预测式变量选择

Here we extend predictive method for model selection of Laud and Ibrahim to the generalized linear model. This prescription avoids the need to directly specify prior probabilities of models and prior densities for the parameters. Instead, a prior prediction for the response induces the required priors. We propose normal and conjugate priors for generalized linear models, each using a single prior prediction for the mean response to induce suitable priors for each…

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Designing Follow-Up Times

随访时间的最优设计

Studies of time-to-event are often conducted using follow-up sessions with subjects at risk. When these sessions must be widely spaced, their timing can significantly affect the efficiency of a study design. In this article we analyze the optimal timing of follow-up from a Bayesian decision theoretic standpoint. The article has two goals: (1) to develop the necessary distributional theory and computational approaches to determine optimal sequential and nonsequential…

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A Unified Approach to Conjoint Analysis Models

联合分析模型的统一方法

We present a unified approach to conjoint analysis models using a Bayesian framework. One data source is used to form a prior distribution for the partworths, whereas full-profile evaluations under a rating scale, ranking, discrete choice, or constant-sum scale constitute the likelihood data (“one model fits all”). Standard existing models for conjoint analysis, considered in the literature, become particular cases of the proposed specification, and explicit formulas for the…

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