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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Bayesian exponentially tilted empirical likelihood

贝叶斯指数倾斜经验似然

While empirical likelihood has been shown to exhibit many of the properties of conventional parametric likelihoods, a formal probabilistic interpretation has so far been lacking. We show that a likelihood function very closely related to empirical likelihood naturally arises from a nonparametric Bayesian procedure which places a type of noninformative prior on the space of distributions. This prior gives preference to distributions having a small support and, among those…

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A note on shrinkage sliced inverse regression

收缩切片逆回归札记

We employ Lasso shrinkage within the context of sufficient dimension reduction to obtain a shrinkage sliced inverse regression estimator, which provides easier interpretations and better prediction accuracy without assuming a parametric model. The shrinkage sliced inverse regression approach can be employed for both single-index and multiple-index models. Simulation studies suggest that the new estimator performs well when its tuning parameter is selected by either the…

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Classification of Missense Mutations of Disease Genes

疾病基因错义突变的分类

Clinical management of individuals found to harbor a mutation at a known disease-susceptibility gene depends on accurate assessment of mutation-specific disease risk. For missense mutations (MMs)-mutations that lead to a single amino acid change in the protein coded by the gene-this poses a particularly challenging problem. Because it is not possible to predict the structural and functional changes to the protein product for a given amino acid substitution, and because…

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Sequential Monte Carlo Methods for Statistical Analysis of Tables

表格统计分析的序贯蒙特卡洛方法

We describe a sequential importance sampling (SIS) procedure for analyzing two-way zero–one or contingency tables with fixed marginal sums. An essential feature of the new method is that it samples the columns of the table progressively according to certain special distributions. Our method produces Monte Carlo samples that are remarkably close to the uniform distribution, enabling one to approximate closely the null distributions of various test statistics about these…

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Variance Estimation in a Model With Gaussian Submodels

具有高斯子模型结构的方差估计

This paper considers the problem of estimating the dispersion parameter in a Gaussian model which is intermediate between a model where the mean parameter is fully known (fixed) and a model where the mean parameter is completely unknown. One of the goals is to understand the implications of the two-step process of first selecting a model among a finite number of sub-models, and then estimating a parameter of interest after the model selection, but using the same sample data.…

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Causal Inference Using Potential Outcomes

使用潜在结果进行因果推断

Causal effects are defined as comparisons of potential outcomes under different treatments on a common set of units. Observed values of the potential outcomes are revealed by the assignment mechanism—a probabilistic model for the treatment each unit receives as a function of covariates and potential outcomes. Fisher made tremendous contributions to causal inference through his work on the design of randomized experiments, but the potential outcomes perspective applies to…

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Missing-Data Methods for Generalized Linear Models

广义线性模型的缺失数据方法

Missing data is a major issue in many applied problems, especially in the biomedical sciences. We review four common approaches for inference in generalized linear models (GLMs) with missing covariate data: maximum likelihood (ML), multiple imputation (MI), fully Bayesian (FB), and weighted estimating equations (WEEs). There is considerable interest in how these four methodologies are related, the properties of each approach, the advantages and disadvantages of each…

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A Bayesian Semiparametric Model for Random-Effects Meta-Analysis

随机效应元分析的贝叶斯半参数模型

In meta-analysis, there is an increasing trend to explicitly acknowledge the presence of study variability through random-effects models. That is, one assumes that for each study there is a study-specific effect and one is observing an estimate of this latent variable. In a random-effects model, one assumes that these study-specific effects come from some distribution, and one can estimate the parameters of this distribution, as well as the study-specific effects themselves.…

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Bilinear Mixed-Effects Models for Dyadic Data

二元关系数据的双线性混合效应模型

This article discusses the use of a symmetric multiplicative interaction effect to capture certain types of third-order dependence patterns often present in social networks and other dyadic datasets. Such an effect, along with standard linear fixed and random effects, is incorporated into a generalized linear model, and a Markov chain Monte Carlo algorithm is provided for Bayesian estimation and inference. In an example analysis of international relations data, accounting…

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A Statistical Model for Signature Verification

签名验证的统计模型

A Bayesian model for off-line signature verification involving the representation of a signature through its curvature is developed. The prior model makes use of a spatial point process for specifying the knots in an approximation restricted to a buffer region close to a template curvature, along with an independent time-warping mechanism. In this way, prior shape information about the signature can be built into the analysis. The observation model is based on additive white…

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Risk-Reducing Shrinkage Estimation for Generalized Linear Models

广义线性模型中降低估计风险的收缩估计

Summary Empirical Bayes techniques for normal theory shrinkage estimation are extended to generalized linear models in a manner retaining the original spirit of shrinkage estimation, which is to reduce risk. The investigation identifies two classes of simple, all-purpose prior distributions, which supplement such non-informative priors as Jeffreys's prior with mechanisms for risk reduction. One new class of priors is motivated as optimizers of a core component of asymptotic…

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Generalized bootstrap for estimating equations

估计方程的广义自助法

We introduce a generalized bootstrap technique for estimators obtained by solving estimating equations. Some special cases of this generalized bootstrap are the classical bootstrap of Efron, the delete-d jackknife and variations of the Bayesian bootstrap. The use of the proposed technique is discussed in some examples. Distributional consistency of the method is established and an asymptotic representation of the resampling variance estimator is obtained.

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Bandwidth choice for nonparametric classification

非参数分类中的带宽选择

It is shown that, for kernel-based classification with univariate distributions and two populations, optimal bandwidth choice has a dichotomous character. If the two densities cross at just one point, where their curvatures have the same signs, then minimum Bayes risk is achieved using bandwidths which are an order of magnitude larger than those which minimize pointwise estimation error. On the other hand, if the curvature signs are different, or if there are multiple…

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General empirical Bayes wavelet methods and exactly adaptive minimax estimation

一般经验贝叶斯小波方法与精确自适应极小极大估计

In many statistical problems, stochastic signals can be represented as a sequence of noisy wavelet coefficients. In this paper, we develop general empirical Bayes methods for the estimation of true signal. Our estimators approximate certain oracle separable rules and achieve adaptation to ideal risks and exact minimax risks in broad collections of classes of signals. In particular, our estimators are uniformly adaptive to the minimum risk of separable estimators and the…

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Bayesian Estimates for Vector Autoregressive Models

向量自回归模型的贝叶斯估计

This article examines frequentist risks of Bayesian estimates of vector autoregressive (VAR) regression coefficient and error covariance matrices under competing loss functions, under various noninformative priors, and in the normal and Student-t models. Simulation results show that for the regression coefficient matrix, an asymmetric LINEX estimator does better overall than the posterior mean. No dominating estimator emerges for the error covariance matrix. We find that the…

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Comparing shocks and frictions in US and euro area business cycles: a Bayesian DSGE Approach

美国与欧元区经济周期的冲击和摩擦比较:贝叶斯 DSGE 方法

Abstract This paper estimates a DSGE model with many types of shocks and frictions for both the US and the euro area economy over a common sample period (1974–2002). The structural estimation methodology allows us to investigate whether differences in business cycle behaviour are due to differences in the type of shocks that affect the two economies, differences in the propagation mechanism of those shocks, or differences in the way the central bank responds to those…

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How well do Markov switching models describe actual business cycles? The case of synchronization

马尔可夫转换模型能多好地描述实际经济周期?以同步性为例

Abstract The objective of this paper is to evaluate the effectiveness of using a Markov switching model to measure the synchronization of business cycles. We use a Bayesian, Gibbs sampling approach to estimate a multivariate Markov switching model of GDP growth for several countries. We look for evidence of synchronization across countries in the sense of common Markov states, covariance of impulses and a long‐run co‐integrating relationship. We then use the fitted data…

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Model selection in irregular problems: Applications to mapping quantitative trait loci

非规则问题中的模型选择:数量性状基因座定位应用

Two methods of model selection are discussed for changepoint-like problems, especially those arising in genetic linkage analysis. The first is a method that selects the model with the smallest p-value, while the second is a modification of the Bayes information criterion. The methods are compared theoretically and on examples from the literature. For these examples, they are roughly comparable although the p-value-based method is somewhat more liberal in selecting a…

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Bayesian-motivated tests of function fit and their asymptotic frequentist properties

贝叶斯动机的函数拟合检验及其渐近频率学性质

We propose and analyze nonparametric tests of the null hypothesis that a function belongs to a specified parametric family. The tests are based on BIC approximations, πBIC, to the posterior probability of the null model, and may be carried out in either Bayesian or frequentist fashion. We obtain results on the asymptotic distribution of πBIC under both the null hypothesis and local alternatives. One version of πBIC, call it π*BIC, uses a class of models that are orthogonal…

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Central limit theorem for sequential Monte Carlo methods and its application to Bayesian inference

序贯蒙特卡洛方法的中心极限定理及其贝叶斯推断应用

The term “sequential Monte Carlo methods” or, equivalently, “particle filters,” refers to a general class of iterative algorithms that performs Monte Carlo approximations of a given sequence of distributions of interest (πt). We establish in this paper a central limit theorem for the Monte Carlo estimates produced by these computational methods. This result holds under minimal assumptions on the distributions πt, and applies in a general framework which encompasses most of…

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A Bayesian χ2 test for goodness-of-fit

用于拟合优度评估的贝叶斯卡方检验

This article describes an extension of classical χ2 goodness-of-fit tests to Bayesian model assessment. The extension, which essentially involves evaluating Pearson’s goodness-of-fit statistic at a parameter value drawn from its posterior distribution, has the important property that it is asymptotically distributed as a χ2 random variable on K−1 degrees of freedom, independently of the dimension of the underlying parameter vector. By examining the posterior distribution of…

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Normalized random measures driven by increasing additive processes

由递增加性过程驱动的归一化随机测度

This paper introduces and studies a new class of nonparametric prior distributions. Random probability distribution functions are constructed via normalization of random measures driven by increasing additive processes. In particular, we present results for the distribution of means under both prior and posterior conditions and, via the use of strategic latent variables, undertake a full Bayesian analysis. Our class of priors includes the well-known and widely used mixture…

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Forecasting in dynamic factor models using Bayesian model averaging

动态因子模型中的贝叶斯模型平均预测

This paper considers the problem of forecasting in dynamic factor models using Bayesian model averaging. Theoretical justifications for averaging across models, as opposed to selecting a single model, are given. Practical methods for implementing Bayesian model averaging with factor models are described. These methods involve algorithms which simulate from the space defined by all possible models. We discuss how these simulation algorithms can also be used to select the…

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