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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Nonparametric function estimation subject to monotonicity, convexity and other shape constraints

单调性、凸性及其他形状约束下的非参数函数估计

This paper uses free-knot and fixed-knot regression splines in a Bayesian context to develop methods for the nonparametric estimation of functions subject to shape constraints in models with log-concave likelihood functions. The shape constraints we consider include monotonicity, convexity and functions with a single minimum. A computationally efficient MCMC sampling algorithm is developed that converges faster than previous methods for non-Gaussian models. Simulation…

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Particle approximations of the score and observed information matrix in state space models with application to parameter estimation

状态空间模型中得分与观测信息矩阵的粒子近似及参数估计

Particle methods are popular computational tools for Bayesian inference in nonlinear non-Gaussian state space models. For this class of models, we present two particle algorithms to compute the score vector and observed information matrix recursively. The first algorithm is implemented with computational complexity and the second with complexity , where N is the number of particles. Although cheaper, the performance of the method degrades quickly, as it relies on the…

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Riemann Manifold Langevin and Hamiltonian Monte Carlo Methods

黎曼流形上的 Langevin 与 Hamiltonian 蒙特卡洛方法

Summary The paper proposes Metropolis adjusted Langevin and Hamiltonian Monte Carlo sampling methods defined on the Riemann manifold to resolve the shortcomings of existing Monte Carlo algorithms when sampling from target densities that may be high dimensional and exhibit strong correlations. The methods provide fully automated adaptation mechanisms that circumvent the costly pilot runs that are required to tune proposal densities for Metropolis–Hastings or indeed…

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Dynamic Trees for Learning and Design

用于学习与试验设计的动态树

Dynamic regression trees are an attractive option for automatic regression and classification with complicated response surfaces in online application settings. We create a sequential tree model whose state changes in time with the accumulation of new data, and provide particle learning algorithms that allow for the efficient online posterior filtering of tree states. A major advantage of tree regression is that it allows for the use of very simple models within each…

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Meta Analysis of Functional Neuroimaging Data via Bayesian Spatial Point Processes

基于贝叶斯空间点过程的功能神经影像元分析

As the discipline of functional neuroimaging grows there is an increasing interest in meta analysis of brain imaging studies. A typical neuroimaging meta analysis collects peak activation coordinates (foci) from several studies and identifies areas of consistent activation. Most imaging meta analysis methods only produce null hypothesis inferences and do not provide an interpretable fitted model. To overcome these limitations, we propose a Bayesian spatial hierarchical model…

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Online Model-Based Clustering for Crisis Identification in Distributed Computing

分布式计算故障识别的在线模型聚类

Large-scale distributed computing systems can suffer from occasional severe violation of performance goals; due to the complexity of these systems, manual diagnosis of the cause of the crisis is too slow to inform interventions taken during the crisis. Rapid automatic recognition of the recurrence of a problem can lead to cause diagnosis and informed intervention. We frame this as an online clustering problem, where the labels (causes) of some of the previous crises may be…

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Bayesian Spatial Quantile Regression

贝叶斯空间分位数回归

Tropospheric ozone is one of the six criteria pollutants regulated by the United States Environmental Protection Agency under the Clean Air Act and has been linked with several adverse health effects, including mortality. Due to the strong dependence on weather conditions, ozone may be sensitive to climate change and there is great interest in studying the potential effect of climate change on ozone, and how this change may affect public health. In this paper we develop a…

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Default estimation, correlated defaults, and expert information

违约率估计、相关违约与专家信息

Capital allocation decisions are made on the basis of an assessment of creditworthiness. Default is a rare event for most segments of a bank's portfolio and data information can be minimal. Inference about default rates is essential for efficient capital allocation, for risk management and for compliance with the requirements of the Basel II rules on capital standards for banks. Expert information is crucial in inference about defaults. A Bayesian approach is proposed and…

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Wishart distributions for decomposable covariance graph models

可分解协方差图模型的 Wishart 分布

Gaussian covariance graph models encode marginal independence among the components of a multivariate random vector by means of a graph G. These models are distinctly different from the traditional concentration graph models (often also referred to as Gaussian graphical models or covariance selection models) since the zeros in the parameter are now reflected in the covariance matrix Σ, as compared to the concentration matrix Ω = Σ−1. The parameter space of interest for…

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Bayesian Non-Parametric Hidden Markov Models with Applications in Genomics

Summary We propose a flexible non-parametric specification of the emission distribution in hidden Markov models and we introduce a novel methodology for carrying out the computations. Whereas current approaches use a finite mixture model, we argue in favour of an infinite mixture model given by a mixture of Dirichlet processes. The computational framework is based on auxiliary variable representations of the Dirichlet process and consists of a forward–backward Gibbs sampling…

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Default priors and predictive performance in Bayesian model averaging, with application to growth determinants

贝叶斯模型平均中的默认先验与预测表现:增长决定因素应用

Bayesian model averaging (BMA) has become widely accepted as a way of accounting for model uncertainty, notably in regression models for identifying the determinants of economic growth. To implement BMA the user must specify a prior distribution in two parts: a prior for the regression parameters and a prior over the model space. Here we address the issue of which default prior to use for BMA in linear regression. We compare 12 candidate parameter priors: the unit…

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On the Existence of Monotone Pure-Strategy Equilibria in Bayesian Games

贝叶斯博弈中单调纯策略均衡的存在性

We generalize Athey's (2001) and McAdams' (2003) results on the existence of monotone pure-strategy equilibria in Bayesian games. We allow action spaces to be compact locally complete metric semilattices and type spaces to be partially ordered probability spaces. Our proof is based on contractibility rather than convexity of best-reply sets. Several examples illustrate the scope of the result, including new applications to multi-unit auctions with risk-averse bidders.

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Composite Likelihood Bayesian Information Criteria for Model Selection in High-Dimensional Data

高维数据模型选择的复合似然贝叶斯信息准则

For high-dimensional data sets with complicated dependency structures, the full likelihood approach often leads to intractable computational complexity. This imposes difficulty on model selection, given that most traditionally used information criteria require evaluation of the full likelihood. We propose a composite likelihood version of the Bayes information criterion (BIC) and establish its consistency property for the selection of the true underlying marginal model. Our…

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Bayesian Random Segmentation Models to Identify Shared Copy Number Aberrations for Array CGH Data

识别阵列 CGH 数据共享拷贝数异常的贝叶斯随机分段模型

Array-based comparative genomic hybridization (aCGH) is a high-resolution high-throughput technique for studying the genetic basis of cancer. The resulting data consists of log fluorescence ratios as a function of the genomic DNA location and provides a cytogenetic representation of the relative DNA copy number variation. Analysis of such data typically involves estimation of the underlying copy number state at each location and segmenting regions of DNA with similar copy…

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Estimability and Likelihood Inference for Generalized Linear Mixed Models Using Data Cloning

通过数据克隆研究广义线性混合模型的可估性与似然推断

Maximum likelihood estimation for Generalized Linear Mixed Models (GLMM), an important class of statistical models with substantial applications in epidemiology, medical statistics, and many other fields, poses significant computational difficulties. In this article, we use data cloning, a simple computational method that exploits advances in Bayesian computation, in particular the Markov Chain Monte Carlo method, to obtain maximum likelihood estimators of the parameters in…

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Autoregressive Mixture Models for Dynamic Spatial Poisson Processes: Application to Tracking Intensity of Violent Crime

动态空间泊松过程的自回归混合模型:暴力犯罪强度追踪

This article develops a set of tools for smoothing and prediction with dependent point event patterns. The methodology is motivated by the problem of tracking weekly maps of violent crime events, but is designed to be straightforward to adapt to a wide variety of alternative settings. In particular, a Bayesian semiparametric framework is introduced for modeling correlated time series of marked spatial Poisson processes. The likelihood is factored into two independent…

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A Bayesian Shrinkage Model for Incomplete Longitudinal Binary Data With Application to the Breast Cancer Prevention Trial

不完整纵向二元数据的贝叶斯收缩模型

We consider inference in randomized longitudinal studies with missing data that is generated by skipped clinic visits and loss to follow-up. In this setting, it is well known that full data estimands are not identified unless unverified assumptions are imposed. We assume a non-future dependence model for the drop-out mechanism and partial ignorability for the intermittent missingness. We posit an exponential tilt model that links non-identifiable distributions and…

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Modeling Longitudinal Data Using a Pair-Copula Decomposition of Serial Dependence

利用成对 Copula 分解序列依赖的纵向数据建模

Copulas have proven to be very successful tools for the flexible modeling of cross-sectional dependence. In this paper we express the dependence structure of continuous-valued time series data using a sequence of bivariate copulas. This corresponds to a type of decomposition recently called a “vine” in the graphical models literature, where each copula is entitled a “pair-copula.” We propose a Bayesian approach for the estimation of this dependence structure for longitudinal…

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Modeling Competing Infectious Pathogens From a Bayesian Perspective: Application to Influenza Studies With Incomplete Laboratory Results

竞争传染病原体的贝叶斯建模:实验室结果不完整的流感研究

In seasonal influenza epidemics, pathogens such as respiratory syncytial virus (RSV) often co-circulate with influenza and cause influenza-like illness (ILI) in human hosts. However, it is often impractical to test for each potential pathogen or to collect specimens for each observed ILI episode, making inference about influenza transmission difficult. In the setting of infectious diseases, missing outcomes impose a particular challenge because of the dependence among…

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Using a Short Screening Scale for Small-Area Estimation of Mental Illness Prevalence for Schools

利用简短筛查量表估计学校层面的精神疾病患病率

We use data collected in the National Comorbidity Survey - Adolescent (NCS-A) to develop a methodology to estimate the small-area prevalence of serious emotional distress (SED) in schools in the United States, exploiting the clustering of the main NCS-A sample by school. The NCS-A instrument includes both a short screening scale, the K6, and extensive diagnostic assessments of the individual disorders and associated impairment that determine the diagnosis of SED. We fitted a…

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Self-Selectivity in Firm’s Decision to Withdraw IPO: Bayesian Inference for Hazard Models of Bankruptcy With Feedback

企业撤回 IPO 决策的自选择:带反馈的破产风险模型贝叶斯推断

Examination on firm performance subsequent to a chosen event is widely used in finance studies to analyze the motivation behind managerial decisions. However, results are often subject to bias when the self-selectivity behind managerial decisions is ignored and unspecified. This study investigates a unique corporate event of initial public offering (IPO) withdrawal, where a firm’s subsequent likelihood of bankruptcy is specified in a system of switching hazard models, and…

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Nonparametric Bayesian density estimation on manifolds with applications to planar shapes

流形上的非参数贝叶斯密度估计及平面形状应用

Statistical analysis on landmark-based shape spaces has diverse applications in morphometrics, medical diagnostics, machine vision and other areas. These shape spaces are non-Euclidean quotient manifolds. To conduct nonparametric inferences, one may define notions of centre and spread on this manifold and work with their estimates. However, it is useful to consider full likelihood-based methods, which allow nonparametric estimation of the probability density. This article…

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On the equivalence of prospective and retrospective likelihood methods in case-control studies

病例对照研究中前瞻与回顾似然方法的等价性

We present new approaches to analyzing case-control studies using prospective likelihood methods. In the classical framework, we extend the equality of the profile likelihoods to the Barndorff-Nielsen modified profile likelihoods for prospective and retrospective models. This enables simple and accurate approximate conditional inference for stratified case-control studies of moderate stratum size. In the Bayesian framework, we provide sufficient conditions on priors for the…

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Sequentially interacting Markov chain Monte Carlo methods

序贯交互马尔可夫链蒙特卡洛方法

Sequential Monte Carlo (SMC) is a methodology for sampling approximately from a sequence of probability distributions of increasing dimension and estimating their normalizing constants. We propose here an alternative methodology named Sequentially Interacting Markov Chain Monte Carlo (SIMCMC). SIMCMC methods work by generating interacting non-Markovian sequences which behave asymptotically like independent Metropolis–Hastings (MH) Markov chains with the desired limiting…

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