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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Latent factor models for density estimation

用于密度估计的潜在因子模型

Abstract: Although discrete mixture modeling has formed the backbone of the literature on Bayesian density estimation, there are some well known disadvantages. We propose an alternative class of priors based on random nonlinear functions of a uniform latent variable with an additive residual. The induced prior for the density is shown to have desirable properties including ease of centering on an initial guess for the density, large support, posterior consistency and…

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Posterior expectation based on empirical likelihoods

基于经验似然的后验期望

Posterior expectation is widely used as a Bayesian point estimator. In this note we extend it from parametric models to nonparametric models using empirical likelihood, and develop a nonparametric analogue of James–Stein estimation. We use the Laplace method to establish asymptotic approximations to our proposed posterior expectations, and show by simulation that they are often more efficient than the corresponding classical nonparametric procedures, especially when the…

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Estimates and Standard Errors for Ratios Of Normalizing Constants from Multiple Markov Chains Via Regeneration

利用再生法估计多条马尔可夫链的归一化常数比及标准误

Summary In the classical biased sampling problem, we have k densities π1(·), …,πk(·), each known up to a normalizing constant, i.e., for l = 1, …,k, πl(·)=νl(·)/ml, where νl(·) is a known function and ml is an unknown constant. For each l, we have an independent and identically distributed sample from πl, and the problem is to estimate the ratios ml/ms for all l and all s. This problem arises frequently in several situations in both frequentist and Bayesian inference. An…

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The Bayesian Bridge

贝叶斯桥估计

Summary We propose the Bayesian bridge estimator for regularized regression and classification. Two key mixture representations for the Bayesian bridge model are developed: a scale mixture of normal distributions with respect to an α-stable random variable; a mixture of Bartlett–Fejer kernels (or triangle densities) with respect to a two-component mixture of gamma random variables. Both lead to Markov chain Monte Carlo methods for posterior simulation, and these methods turn…

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Theory-coherent forecasting

与经济理论一致的预测

We consider a method for producing multivariate density forecasts that satisfy moment restrictions implied by economic theory, such as Euler conditions. The method starts from a base forecast that might not satisfy the theoretical restrictions and forces it to satisfy the moment conditions using exponential tilting. Although exponential tilting has been considered before in a Bayesian context (Robertson et al. 2005), our main contributions are: (1) to adapt the method to a…

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A second-order efficient empirical Bayes confidence interval

二阶有效的经验贝叶斯置信区间

We introduce a new adjusted residual maximum likelihood method (REML) in the context of producing an empirical Bayes (EB) confidence interval for a normal mean, a problem of great interest in different small area applications. Like other rival empirical Bayes confidence intervals such as the well-known parametric bootstrap empirical Bayes method, the proposed interval is second-order correct, that is, the proposed interval has a coverage error of order $O(m^{-{3}/{2}})$.…

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PANEL STRUCTURAL MODELING WITH WEAK INSTRUMENTATION AND COVARIANCE RESTRICTIONS

弱工具变量与协方差约束下的面板结构建模

This paper considers estimating a panel data simultaneous equations model under both coefficient and covariance matrix restrictions in a scenario where one or the other set of identifying restrictions may be invalid or may hold only weakly. We study the limiting properties of various estimators in an asymptotic framework, which takes both the cross-sectional dimension N and the time dimension T to infinity. In this setting as in the pure cross-sectional setup, the…

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MODELLING REGIME SWITCHING AND STRUCTURAL BREAKS WITH AN INFINITE HIDDEN MARKOV MODEL

SUMMARY This paper proposes an infinite hidden Markov model to integrate the regime switching and structural break dynamics in a unified Bayesian framework. Two parallel hierarchical structures, one governing the transition probabilities and another governing the parameters of the conditional data density, keep the model parsimonious and improve forecasts. This flexible approach allows for regime persistence and estimates the number of states automatically. An application to…

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Bayesian Generalized Low Rank Regression Models for Neuroimaging Phenotypes and Genetic Markers

神经影像表型与遗传标记的贝叶斯广义低秩回归

We propose a Bayesian generalized low rank regression model (GLRR) for the analysis of both high-dimensional responses and covariates. This development is motivated by performing searches for associations between genetic variants and brain imaging phenotypes. GLRR integrates a low rank matrix to approximate the high-dimensional regression coefficient matrix of GLRR and a dynamic factor model to model the high-dimensional covariance matrix of brain imaging phenotypes. Local…

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Estimating Ocean Circulation: An MCMC Approach With Approximated Likelihoods via the Bernoulli Factory

海洋环流估计:借助伯努利工厂与似然估计的MCMC方法

We provide a Bayesian analysis of ocean circulation based on data collected in the South Atlantic Ocean. The analysis incorporates a reaction-diffusion partial differential equation that is not solvable in closed form. This leads to an intractable likelihood function. We describe a novel Markov chain Monte Carlo approach that does not require a likelihood evaluation. Rather, we use unbiased estimates of the likelihood and a Bernoulli factory to decide whether or not proposed…

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Mechanistic Hierarchical Gaussian Processes

融合机理信息的层级高斯过程

The statistics literature on functional data analysis focuses primarily on flexible black-box approaches, which are designed to allow individual curves to have essentially any shape while characterizing variability. Such methods typically cannot incorporate mechanistic information, which is commonly expressed in terms of differential equations. Motivated by studies of muscle activation, we propose a nonparametric Bayesian approach that takes into account mechanistic…

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Functional Principal Component Analysis of Spatiotemporal Point Processes With Applications in Disease Surveillance

时空点过程的函数主成分分析及疾病监测应用

In disease surveillance applications, the disease events are modeled by spatio-temporal point processes. We propose a new class of semiparametric generalized linear mixed model for such data, where the event rate is related to some known risk factors and some unknown latent random effects. We model the latent spatio-temporal process as spatially correlated functional data, and propose Poisson maximum likelihood and composite likelihood methods based on spline approximations…

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Inference From Intrinsic Bayes’ Procedures Under Model Selection and Uncertainty

模型选择与不确定性下的内在贝叶斯推断

In this article, we present a fully coherent and consistent objective Bayesian analysis of the linear regression model using intrinsic priors. The intrinsic prior is a scaled mixture of g-priors and promotes shrinkage toward the subspace defined by a base (or null) model. While it has been established that the intrinsic prior provides consistent model selectors across a range of models, the posterior distribution of the model parameters has not previously been investigated.…

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Optimal Tests of Treatment Effects for the Overall Population and Two Subpopulations in Randomized Trials, Using Sparse Linear Programming

用稀疏线性规划优化随机试验总体与两个亚组的治疗效应检验

We propose new, optimal methods for analyzing randomized trials, when it is suspected that treatment effects may differ in two predefined subpopulations. Such subpopulations could be defined by a biomarker or risk factor measured at baseline. The goal is to simultaneously learn which subpopulations benefit from an experimental treatment, while providing strong control of the familywise Type I error rate. We formalize this as a multiple testing problem and show it is…

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Bayesian Aggregation of Order-Based Rank Data

基于排序数据的贝叶斯聚合

Rank aggregation, that is, combining several ranking functions (called base rankers) to get aggregated, usually stronger rankings of a given set of items, is encountered in many disciplines. Most methods in the literature assume that base rankers of interest are equally reliable. It is very common in practice, however, that some rankers are more informative and reliable than others. It is desirable to distinguish high quality base rankers from low quality ones and treat them…

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A Bayesian Nonparametric Modeling Framework for Developmental Toxicity Studies

发育毒性研究的贝叶斯非参数混合建模框架

We develop a Bayesian nonparametric mixture modeling framework for replicated count responses in dose-response settings. We explore this methodology for modeling and risk assessment in developmental toxicity studies, where the primary objective is to determine the relationship between the level of exposure to a toxic chemical and the probability of a physiological or biochemical response, or death. Data from these experiments typically involve features that cannot be…

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Bayesian Nonparametric Instrumental Variables Regression Based on Penalized Splines and Dirichlet Process Mixtures

基于惩罚样条与狄利克雷过程混合的贝叶斯非参数工具变量回归

We propose a Bayesian nonparametric instrumental variable approach under additive separability that allows us to correct for endogeneity bias in regression models where the covariate effects enter with unknown functional form. Bias correction relies on a simultaneous equations specification with flexible modeling of the joint error distribution implemented via a Dirichlet process mixture prior. Both the structural and instrumental variable equation are specified in terms of…

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Varying Naïve Bayes Models With Applications to Classification of Chinese Text Documents

时变朴素贝叶斯模型及其在中文文本分类中的应用

Document classification is an area of great importance for which many classification methods have been developed. However, most of these methods cannot generate time-dependent classification rules. Thus, they are not the best choices for problems with time-varying structures. To address this problem, we propose a varying naïve Bayes model, which is a natural extension of the naïve Bayes model that allows for time-dependent classification rule. The method of kernel smoothing…

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Multiple Imputation of Missing or Faulty Values Under Linear Constraints

线性约束下缺失值或错误值的多重插补

Many statistical agencies, survey organizations, and research centers collect data that suffer from item nonresponse and erroneous or inconsistent values. These data may be required to satisfy linear constraints, for example, bounds on individual variables and inequalities for ratios or sums of variables. Often these constraints are designed to identify faulty values, which then are blanked and imputed. The data also may exhibit complex distributional features, including…

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Semiparametric Inference in Dynamic Binary Choice Models

动态二元选择模型中的半参数推断

We introduce an approach for semiparametric inference in dynamic binary choice models that does not impose distributional assumptions on the state variables unobserved by the econometrician. The proposed framework combines Bayesian inference with partial identification results. The method is applicable to models with finite space of observed states. We demonstrate the method on Rust's model of bus engine replacement. The estimation experiments show that the parametric…

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Bayes and empirical Bayes: do they merge?

贝叶斯与经验贝叶斯:后验分布会趋同吗?

Bayesian inference is attractive due to its internal coherence and for often having good frequentist properties. However, eliciting an honest prior may be difficult, and common practice is to take an empirical Bayes approach using an estimate of the prior hyperparameters. Although not rigorous, the underlying idea is that, for a sufficiently large sample size, empirical Bayes methods should lead to similar inferential answers as a proper Bayesian inference. However, precise…

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Bayesian monotone regression using Gaussian process projection

利用高斯过程投影的贝叶斯单调回归

Shape-constrained regression analysis has applications in dose-response modelling, environmental risk assessment, disease screening and many other areas. Incorporating the shape constraints can improve estimation efficiency and avoid implausible results. We propose a novel method, focusing on monotone curve and surface estimation, which uses Gaussian process projections. Our inference is based on projecting posterior samples from the Gaussian process. We develop theory on…

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Sequential combination of weighted and nonparametric bagging for classification

用于分类的加权与非参数袋装法的序贯组合

We propose a simple sequential procedure for bagged classification, which modifies nonparametric bagging by randomizing class labels of resampled data points. The random labelling feature of the procedure also enables us to undertake unsupervised classification with the benefit of supervised learning. Theoretical properties are given for the nearest neighbour classifier in the case of supervised learning and a hard-thresholding indicator in the case of unsupervised learning,…

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Posterior contraction in sparse Bayesian factor models for massive covariance matrices

超大协方差矩阵稀疏贝叶斯因子模型的后验收缩

Sparse Bayesian factor models are routinely implemented for parsimonious dependence modeling and dimensionality reduction in high-dimensional applications. We provide theoretical understanding of such Bayesian procedures in terms of posterior convergence rates in inferring high-dimensional covariance matrices where the dimension can be larger than the sample size. Under relevant sparsity assumptions on the true covariance matrix, we show that commonly-used point mass mixture…

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