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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Generalized Ewens-Pitman model for Bayesian clustering

用于贝叶斯聚类的广义Ewens–Pitman模型

We propose a Bayesian method for clustering from discrete data structures that commonly arise in genetics and other applications. This method is equivariant with respect to relabelling units; unsampled units do not interfere with sampled data; and missing data do not hinder inference. Cluster inference using the posterior mode performs well on simulated and real datasets, and the posterior predictive distribution enables supervised learning based on a partial clustering of…

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Sparse Additive Regression on a Regular Lattice

规则格点上的稀疏加性回归

Summary We consider estimation in a sparse additive regression model with the design points on a regular lattice. We establish the minimax convergence rates over Sobolev classes and propose a Fourier-based rate optimal estimator which is adaptive to the unknown sparsity and smoothness of the response function. The estimator is derived within a Bayesian formalism but can be naturally viewed as a penalized maximum likelihood estimator with the complexity penalties on the…

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Estimating dynamic equilibrium models with stochastic volatility

含随机波动率的动态均衡模型估计

This paper develops a particle filtering algorithm to estimate dynamic equilibrium models with stochastic volatility using a likelihood-based approach. The algorithm, which exploits the structure and profusion of shocks in stochastic volatility models, is versatile and computationally tractable even in large-scale models. As an application, we use our algorithm and Bayesian methods to estimate a business cycle model of the US economy with both stochastic volatility and…

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Model averaging estimation of generalized linear models with imputed covariates

协变量经插补的广义线性模型之模型平均估计

We address the problem of estimating generalized linear models when some covariate values are missing but imputations are available to fill-in the missing values. This situation generates a bias-precision trade-off in the estimation of the model parameters. Extending the generalized missing-indicator method proposed by Dardanoni et al. (2011) for linear regression, we handle this trade-off as a problem of model uncertainty using Bayesian averaging of classical maximum…

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CAUSAL ANALYSIS AFTER HAAVELMO

Haavelmo 之后的因果分析

Haavelmo’s seminal 1943 and 1944 papers are the first rigorous treatment of causality. In them, he distinguished the definition of causal parameters from their identification. He showed that causal parameters are defined using hypothetical models that assign variation to some of the inputs determining outcomes while holding all other inputs fixed. He thus formalized and made operational Marshall’s (1890) ceteris paribus analysis. We embed Haavelmo’s framework into the…

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Multi-Agent Inference in Social Networks: A Finite Population Learning Approach

社会网络中的多主体推断:有限总体学习方法

When people in a society want to make inference about some parameter, each person may want to use data collected by other people. Information (data) exchange in social networks is usually costly, so to make reliable statistical decisions, people need to trade off the benefits and costs of information acquisition. Conflicts of interests and coordination problems will arise in the process. Classical statistics does not consider people's incentives and interactions in the data…

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Decoupling Shrinkage and Selection in Bayesian Linear Models: A Posterior Summary Perspective

贝叶斯线性模型中收缩与选择的解耦:后验摘要视角

Selecting a subset of variables for linear models remains an active area of research. This article reviews many of the recent contributions to the Bayesian model selection and shrinkage prior literature. A posterior variable selection summary is proposed, which distills a full posterior distribution over regression coefficients into a sequence of sparse linear predictors.

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Calibration of Computational Models With Categorical Parameters and Correlated Outputs via Bayesian Smoothing Spline ANOVA

通过贝叶斯平滑样条 ANOVA 校准含类别参数与相关输出的计算模型

It has become commonplace to use complex computer models to predict outcomes in regions where data do not exist. Typically these models need to be calibrated and validated using some experimental data, which often consists of multiple correlated outcomes. In addition, some of the model parameters may be categorical in nature, such as a pointer variable to alternate models (or submodels) for some of the physics of the system. Here, we present a general approach for…

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A Flexible Bayesian Approach to Monotone Missing Data in Longitudinal Studies With Nonignorable Missingness With Application to an Acute Schizophrenia Clinical Trial

非可忽略单调缺失纵向数据的灵活贝叶斯方法及精神分裂症试验应用

We develop a Bayesian nonparametric model for a longitudinal response in the presence of nonignorable missing data. Our general approach is to first specify a working model that flexibly models the missingness and full outcome processes jointly. We specify a Dirichlet process mixture of missing at random (MAR) models as a prior on the joint distribution of the working model. This aspect of the model governs the fit of the observed data by modeling the observed data…

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Bayesian Generalized Additive Models for Location, Scale, and Shape for Zero-Inflated and Overdispersed Count Data

零膨胀与过度离散计数数据的位置、尺度和形状贝叶斯广义加性模型

Frequent problems in applied research preventing the application of the classical Poisson log-linear model for analyzing count data include overdispersion, an excess of zeros compared to the Poisson distribution, correlated responses, as well as complex predictor structures comprising nonlinear effects of continuous covariates, interactions or spatial effects. We propose a general class of Bayesian generalized additive models for zero-inflated and overdispersed count data…

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Risk Classification With an Adaptive Naive Bayes Kernel Machine Model

基于自适应朴素贝叶斯核机器模型的疾病风险分类

Genetic studies of complex traits have uncovered only a small number of risk markers explaining a small fraction of heritability and adding little improvement to disease risk prediction. Standard single marker methods may lack power in selecting informative markers or estimating effects. Most existing methods also typically do not account for non-linearity. Identifying markers with weak signals and estimating their joint effects among many non-informative markers remains…

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Bayesian Inference of Multiple Gaussian Graphical Models

多个高斯图模型的贝叶斯推断

In this paper, we propose a Bayesian approach to inference on multiple Gaussian graphical models. Specifically, we address the problem of inferring multiple undirected networks in situations where some of the networks may be unrelated, while others share common features. We link the estimation of the graph structures via a Markov random field (MRF) prior which encourages common edges. We learn which sample groups have a shared graph structure by placing a spike-and-slab…

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Flexible Modeling of Dependence in Volatility Processes

波动率过程依赖结构的灵活建模

This article proposes a novel stochastic volatility (SV) model that draws from the existing literature on autoregressive SV models, aggregation of autoregressive processes, and Bayesian nonparametric modeling to create a SV model that can capture long-range dependence. The volatility process is assumed to be the aggregate of autoregressive processes, where the distribution of the autoregressive coefficients is modeled using a flexible Bayesian approach. The model provides…

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Jointly Interventional and Observational Data: Estimation of Interventional Markov Equivalence Classes of Directed Acyclic Graphs

联合观测与干预数据估计有向无环图的干预马尔可夫等价类

Summary In many applications we have both observational and (randomized) interventional data. We propose a Gaussian likelihood framework for joint modelling of such different data types, based on global parameters consisting of a directed acyclic graph and corresponding edge weights and error variances. Thanks to the global nature of the parameters, maximum likelihood estimation is reasonable with only one or few data points per intervention. We prove consistency of the…

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Conditional Inferential Models: Combining Information for Prior-Free Probabilistic Inference

条件推断模型:汇集信息以进行无先验概率推断

Summary The inferential model (IM) framework provides valid prior-free probabilistic inference by focusing on predicting unobserved auxiliary variables. But, efficient IM-based inference can be challenging when the auxiliary variable is of higher dimension than the parameter. Here we show that features of the auxiliary variable are often fully observed and, in such cases, a simultaneous dimension reduction and information aggregation can be achieved by conditioning. This…

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False Discovery Control in Large-Scale Spatial Multiple Testing

大规模空间多重检验中的错误发现控制

Summary The paper develops a unified theoretical and computational framework for false discovery control in multiple testing of spatial signals. We consider both pointwise and clusterwise spatial analyses, and derive oracle procedures which optimally control the false discovery rate, false discovery exceedance and false cluster rate. A data-driven finite approximation strategy is developed to mimic the oracle procedures on a continuous spatial domain. Our multiple-testing…

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Marginally Specified Priors for Non-Parametric Bayesian Estimation

非参数贝叶斯估计中的边际指定先验

Summary Prior specification for non-parametric Bayesian inference involves the difficult task of quantifying prior knowledge about a parameter of high, often infinite, dimension. A statistician is unlikely to have informed opinions about all aspects of such a parameter but will have real information about functionals of the parameter, such as the population mean or variance. The paper proposes a new framework for non-parametric Bayes inference in which the prior distribution…

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Reinforced urn processes for credit risk models

信用风险模型中的强化 urn 过程

We propose a Bayesian nonparametric model to estimate rating migration matrices and default probabilities using the reinforced urn processes (RUP) introduced in Muliere et al. (2000). The estimated default probability becomes our prior information in a parametric model for the prediction of the number of bankruptcies, with the only assumption of exchangeability within rating classes. The Polya urn construction of the transition matrix justifies a Beta distributed de Finetti…

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Evaluating Point and Density Forecasts of DSGE Models

评估DSGE模型的点预测与密度预测

This paper investigates the accuracy of forecasts from four dynamic stochastic general equilibrium (DSGE) models for inflation, output growth and the federal funds rate using a real-time dataset synchronized with the Fed's Greenbook projections. Conditioning the model forecasts on the Greenbook nowcasts leads to forecasts that are as accurate as the Greenbook projections for output growth and the federal funds rate. Only for inflation are the model forecasts dominated by the…

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Bayesian VARs: Specification Choices and Forecast Accuracy

贝叶斯 VAR:模型设定选择与预测准确性

In this paper we discuss how the point and density forecasting performance of Bayesian vector autoregressions (BVARs) is affected by a number of specification choices. We adopt as a benchmark a common specification in the literature, a BVAR with variables entering in levels and a prior modeled along the lines of Sims and Zha (International Economic Review 1998; 39: 949–968). We then consider optimal choice of the tightness, of the lag length and of both; evaluate the…

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Sign Restrictions, Structural Vector Autoregressions, and Useful Prior Information

符号限制、结构向量自回归与有用的先验信息

This paper makes the following original contributions to the literature. (i) We develop a simpler analytical characterization and numerical algorithm for Bayesian inference in structural vector autoregressions (VARs) that can be used for models that are overidentified, just-identified, or underidentified. (ii) We analyze the asymptotic properties of Bayesian inference and show that in the underidentified case, the asymptotic posterior distribution of contemporaneous…

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Robust Bayesian variable selection in linear models with spherically symmetric errors

球对称误差线性模型中的稳健贝叶斯变量选择

This paper studies Bayesian variable selection in linear models with general spherically symmetric error distributions. We construct the posterior odds based on a separable prior, which arises as a class of mixtures of Gaussian densities. The posterior odds for comparing among nonnull models are shown to be independent of the error distribution, if this is spherically symmetric. Because of this invariance, we refer to our method as a robust Bayesian variable selection…

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Nonparametric Bayes dynamic modelling of relational data

关系数据的非参数贝叶斯动态建模

Symmetric binary matrices representing relations are collected in many areas. Our focus is on dynamically evolving binary relational matrices, with interest being on inference on the relationship structure and prediction. We propose a nonparametric Bayesian dynamic model, which reduces dimensionality in characterizing the binary matrix through a lower-dimensional latent space representation, with the latent coordinates evolving in continuous time via Gaussian processes. By…

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Asymptotic theory of generalized information criterion for geostatistical regression model selection

地统计回归模型选择中广义信息准则的渐近理论

Information criteria, such as Akaike’s information criterion and Bayesian information criterion are often applied in model selection. However, their asymptotic behaviors for selecting geostatistical regression models have not been well studied, particularly under the fixed domain asymptotic framework with more and more data observed in a bounded fixed region. In this article, we study the generalized information criterion (GIC) for selecting geostatistical regression models…

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