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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Log-Linear Bayesian Additive Regression Trees for Multinomial Logistic and Count Regression Models

多项 Logistic 与计数回归的对数线性贝叶斯加性回归树

We introduce Bayesian additive regression trees (BART) for log-linear models including multinomial logistic regression and count regression with zero-inflation and overdispersion. BART has been applied to nonparametric mean regression and binary classification problems in a range of settings. However, existing applications of BART have been mostly limited to models for Gaussian “data,” either observed or latent. This is primarily because efficient MCMC algorithms are…

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Modeling Multiple Time-Varying Related Groups: A Dynamic Hierarchical Bayesian Approach With an Application to the Health and Retirement Study

多个时变关联群组的建模:动态层次贝叶斯方法及其在健康与退休研究中的应用

As the population of the older individuals continues to grow, it is important to study the relationship among the variables measuring financial health and physical health of the older individuals to better understand the demand for healthcare, and health insurance. We propose a semiparametric approach to jointly model these variables. We use data from the Health and Retirement Study which includes a set of correlated longitudinal variables measuring financial and physical…

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On Constraining Projections of Future Climate Using Observations and Simulations From Multiple Climate Models

利用观测与多气候模型模拟约束未来气候预测

Numerical climate models are used to project future climate change due to both anthropogenic and natural causes. Differences between projections from different climate models are a major source of uncertainty about future climate. Emergent relationships shared by multiple climate models have the potential to constrain our uncertainty when combined with historical observations. We combine projections from 13 climate models with observational data to quantify the impact of…

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Bayesian Joint Modeling of Multiple Brain Functional Networks

多个脑功能网络的贝叶斯联合建模

Investigating the similarity and changes in brain networks under different mental conditions has become increasingly important in neuroscience research. A standard separate estimation strategy fails to pool information across networks and hence has reduced estimation accuracy and power to detect between-network differences. Motivated by a fMRI Stroop task experiment that involves multiple related tasks, we develop an integrative Bayesian approach for jointly modeling…

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Bayesian Structure Learning in Multilayered Genomic Networks

多层基因组网络中的贝叶斯结构学习

Integrative network modeling of data arising from multiple genomic platforms provides insight into the holistic picture of the interactive system, as well as the flow of information across many disease domains including cancer. The basic data structure consists of a sequence of hierarchically ordered datasets for each individual subject, which facilitates integration of diverse inputs, such as genomic, transcriptomic, and proteomic data. A primary analytical task in such…

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Bayesian Regression With Undirected Network Predictors With an Application to Brain Connectome Data

以无向网络为预测变量的贝叶斯回归:脑连接组应用

This article focuses on the relationship between a measure of creativity and the human brain network for subjects in a brain connectome dataset obtained using a diffusion weighted magnetic resonance imaging procedure. We identify brain regions and interconnections that have a significant effect on creativity. Brain networks are often expressed in terms of symmetric adjacency matrices, with row and column indices of the matrix representing the regions of interest (ROI), and a…

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High-Dimensional Macroeconomic Forecasting Using Message Passing Algorithms

利用消息传递算法进行高维宏观经济预测

This article proposes two distinct contributions to econometric analysis of large information sets and structural instabilities. First, it treats a regression model with time-varying coefficients, stochastic volatility, and exogenous predictors, as an equivalent high-dimensional static regression problem with thousands of covariates. Inference in this specification proceeds using Bayesian hierarchical priors that shrink the high-dimensional vector of coefficients either…

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Semiparametric GARCH via Bayesian Model Averaging

基于贝叶斯模型平均的半参数 GARCH

As the dynamic structure of financial markets is subject to dramatic change, a model capable of providing consistently accurate volatility estimates should not make rigid assumptions on how prices change over time. Most volatility models impose a particular parametric functional form that relates an observed price change to a volatility forecast (news impact function). Here, a new class of functional coefficient semiparametric volatility models is proposed, where the news…

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Gaussian Processes and Bayesian Moment Estimation

高斯过程与贝叶斯矩估计

Given a set of moment restrictions (MRs) that overidentify a parameter θ, we investigate a semiparametric Bayesian approach for inference on θ that does not restrict the data distribution F apart from the MRs. As main contribution, we construct a degenerate Gaussian process prior that, conditionally on θ, restricts the F generated by this prior to satisfy the MRs with probability one. Our prior works even in the more involved case where the number of MRs is larger than the…

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Coverage of credible intervals in nonparametric monotone regression

非参数单调回归中可信区间的覆盖率

For nonparametric univariate regression under a monotonicity constraint on the regression function f, we study the coverage of a Bayesian credible interval for f(x0), where x0 is an interior point. Analysis of the posterior becomes a lot more tractable by considering a “projection-posterior” distribution based on a finite random series of step functions with normal basis coefficients as a prior for f. A sample f from the resulting conjugate posterior distribution is…

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Survival analysis via hierarchically dependent mixture hazards

基于层次依赖混合风险率的生存分析

Hierarchical nonparametric processes are popular tools for defining priors on collections of probability distributions, which induce dependence across multiple samples. In survival analysis problems, one is typically interested in modeling the hazard rates, rather than the probability distributions themselves, and the currently available methodologies are not applicable. Here, we fill this gap by introducing a novel, and analytically tractable, class of multivariate mixtures…

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Combining shrinkage and sparsity in conjugate vector autoregressive models

共轭向量自回归模型中收缩与稀疏性的结合

Summary Conjugate priors allow for fast inference in large dimensional vector autoregressive (VAR) models. But at the same time, they introduce the restriction that each equation features the same set of explanatory variables. This paper proposes a straightforward means of postprocessing posterior estimates of a conjugate Bayesian VAR to effectively perform equation‐specific covariate selection. Compared with existing techniques using shrinkage alone, our approach combines…

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Online estimation of DSGE models

DSGE 模型的在线估计

Summary This paper illustrates the usefulness of sequential Monte Carlo (SMC) methods in approximating dynamic stochastic general equilibrium (DSGE) model posterior distributions. We show how the tempering schedule can be chosen adaptively, document the accuracy and runtime benefits of generalized data tempering for ‘online’ estimation (that is, re-estimating a model as new data become available), and provide examples of multimodal posteriors that are well captured by SMC…

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In search of lost mixing time: adaptive Markov chain Monte Carlo schemes for Bayesian variable selection with very large p

寻找失落的混合时间:超高维贝叶斯变量选择的自适应 MCMC

Summary The availability of datasets with large numbers of variables is rapidly increasing. The effective application of Bayesian variable selection methods for regression with these datasets has proved difficult since available Markov chain Monte Carlo methods do not perform well in typical problem sizes of interest. We propose new adaptive Markov chain Monte Carlo algorithms to address this shortcoming. The adaptive design of these algorithms exploits the observation that…

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Frequentist properties of Bayesian inequality tests

贝叶斯不等式检验的频率学派性质

Bayesian and frequentist criteria fundamentally differ, but often posterior and sampling distributions agree asymptotically. For the corresponding single-draw experiment, we characterize the frequentist size of a certain Bayesian hypothesis test of (possibly nonlinear) inequalities. If the null hypothesis is that the parameter lies in a specified half-space, then the Bayesian test’s size equals α; if the null hypothesis is a subset of a half-space, then size is above α;…

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Gibbs Flow for Approximate Transport with Applications to Bayesian Computation

用于近似输运的 Gibbs 流及其贝叶斯计算应用

Abstract Let π0 and π1 be two distributions on the Borel space (Rd,B(Rd)). Any measurable function T:Rd→Rd such that Y=T(X)∼π1 if X∼π0 is called a transport map from π0 to π1. For any π0 and π1, if one could obtain an analytical expression for a transport map from π0 to π1, then this could be straightforwardly applied to sample from any distribution. One would map draws from an easy-to-sample distribution π0 to the target distribution π1 using this transport map. Although it…

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Use of Model Reparametrization to Improve Variational Bayes

通过模型重参数化改进变分贝叶斯推断

Abstract We propose using model reparametrization to improve variational Bayes inference for hierarchical models whose variables can be classified as global (shared across observations) or local (observation-specific). Posterior dependence between local and global variables is minimized by applying an invertible affine transformation on the local variables. The functional form of this transformation is deduced by approximating the posterior distribution of each local…

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Classification accuracy as a proxy for two-sample testing

以分类准确率作为两样本检验的替代依据

When data analysts train a classifier and check if its accuracy is significantly different from chance, they are implicitly performing a two-sample test. We investigate the statistical properties of this flexible approach in the high-dimensional setting. We prove two results that hold for all classifiers in any dimensions: if its true error remains $\epsilon $-better than chance for some $\epsilon >0$ as $d,n\to \infty $, then (a) the permutation-based test is consistent…

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Frequentist validity of Bayesian limits

贝叶斯极限的频率学有效性

To the frequentist who computes posteriors, not all priors are useful asymptotically: in this paper, a Bayesian perspective on test sequences is proposed and Schwartz’s Kullback–Leibler condition is generalised to widen the range of frequentist applications of posterior convergence. With Bayesian tests and a weakened form of contiguity termed remote contiguity, we prove simple and fully general frequentist theorems, for posterior consistency and rates of convergence, for…

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Complex sampling designs: Uniform limit theorems and applications

复杂抽样设计:一致极限定理及其应用

In this paper, we develop a general approach to proving global and local uniform limit theorems for the Horvitz–Thompson empirical process arising from complex sampling designs. Global theorems such as Glivenko–Cantelli and Donsker theorems, and local theorems such as local asymptotic modulus and related ratio-type limit theorems are proved for both the Horvitz–Thompson empirical process, and its calibrated version. Limit theorems of other variants and their conditional…

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Estimation of low-rank matrices via approximate message passing

利用近似消息传递估计低秩矩阵

Consider the problem of estimating a low-rank matrix when its entries are perturbed by Gaussian noise, a setting that is also known as “spiked model” or “deformed random matrix.” If the empirical distribution of the entries of the spikes is known, optimal estimators that exploit this knowledge can substantially outperform simple spectral approaches. Recent work characterizes the asymptotic accuracy of Bayes-optimal estimators in the high-dimensional limit. In this paper, we…

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Transfer learning for nonparametric classification: Minimax rate and adaptive classifier

非参数分类的迁移学习:极小极大速率与自适应分类器

Human learners have the natural ability to use knowledge gained in one setting for learning in a different but related setting. This ability to transfer knowledge from one task to another is essential for effective learning. In this paper, we study transfer learning in the context of nonparametric classification based on observations from different distributions under the posterior drift model, which is a general framework and arises in many practical problems. We first…

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OPTIMAL AUXILIARY PRIORS AND REVERSIBLE JUMP PROPOSALS FOR A CLASS OF VARIABLE DIMENSION MODELS

变维模型的最优辅助先验与可逆跳跃提议

This article develops a Markov chain Monte Carlo (MCMC) method for a class of models that encompasses finite and countable mixtures of densities and mixtures of experts with a variable number of mixture components. The method is shown to maximize the expected probability of acceptance for cross-dimensional moves and to minimize the asymptotic variance of sample average estimators under certain restrictions. The method can be represented as a retrospective sampling algorithm…

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Stochastic Gradient Markov Chain Monte Carlo

随机梯度马尔可夫链蒙特卡洛

Markov chain Monte Carlo (MCMC) algorithms are generally regarded as the gold standard technique for Bayesian inference. They are theoretically well-understood and conceptually simple to apply in practice. The drawback of MCMC is that performing exact inference generally requires all of the data to be processed at each iteration of the algorithm. For large datasets, the computational cost of MCMC can be prohibitive, which has led to recent developments in scalable Monte…

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