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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Covariate-Informed Latent Interaction Models: Addressing Geographic & Taxonomic Bias in Predicting Bird–Plant Interactions

协变量引导的潜在交互模型:校正鸟类与植物互动预测的地理及分类偏差

Reductions in natural habitats urge that we better understand species’ interconnection and how biological communities respond to environmental changes. However, ecological studies of species’ interactions are limited by their geographic and taxonomic focus which can distort our understanding of interaction dynamics. We focus on bird–plant interactions that refer to situations of potential fruit consumption and seed dispersal. We develop an approach for predicting species’…

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Reversible Jump PDMP Samplers for Variable Selection

用于变量选择的可逆跳跃分段确定性马尔可夫过程采样器

A new class of Markov chain Monte Carlo (MCMC) algorithms, based on simulating piecewise deterministic Markov processes (PDMPs), has recently shown great promise: they are nonreversible, can mix better than standard MCMC algorithms, and can use subsampling ideas to speed up computation in big data scenarios. However, current PDMP samplers can only sample from posterior densities that are differentiable almost everywhere, which precludes their use for model choice. Motivated…

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Bayesian Inference Using Synthetic Likelihood: Asymptotics and Adjustments

合成似然贝叶斯推断:渐近性质与调整

Implementing Bayesian inference is often computationally challenging in complex models, especially when calculating the likelihood is difficult. Synthetic likelihood is one approach for carrying out inference when the likelihood is intractable, but it is straightforward to simulate from the model. The method constructs an approximate likelihood by taking a vector summary statistic as being multivariate normal, with the unknown mean and covariance estimated by simulation.…

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Approximate Selective Inference via Maximum Likelihood

基于最大似然的近似选择后推断

Several strategies have been developed recently to ensure valid inference after model selection; some of these are easy to compute, while others fare better in terms of inferential power. In this article, we consider a selective inference framework for Gaussian data. We propose a new method for inference through approximate maximum likelihood estimation. Our goal is to: (a) achieve better inferential power with the aid of randomization, (b) bypass expensive MCMC sampling…

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A Bayesian Approach to Multiple-Output Quantile Regression

多输出分位数回归的贝叶斯方法

This paper presents a Bayesian approach to multiple-output quantile regression. The unconditional model is proven to be consistent and asymptotically correct frequentist confidence intervals can be obtained. The prior for the unconditional model can be elicited as the ex-ante knowledge of the distance of the tau-Tukey depth contour to the Tukey median, the first prior of its kind. A proposal for conditional regression is also presented. The model is applied to the Tennessee…

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Bayesian Modeling of Sequential Discoveries

序贯新发现的贝叶斯建模

We aim at modeling the appearance of distinct tags in a sequence of labeled objects. Common examples of this type of data include words in a corpus or distinct species in a sample. These sequential discoveries are often summarized via accumulation curves, which count the number of distinct entities observed in an increasingly large set of objects. We propose a novel Bayesian method for species sampling modeling by directly specifying the probability of a new discovery,…

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Metropolis–Hastings via Classification

通过分类实现 Metropolis–Hastings 后验采样

This article develops a Bayesian computational platform at the interface between posterior sampling and optimization in models whose marginal likelihoods are difficult to evaluate. Inspired by contrastive learning and Generative Adversarial Networks (GAN), we reframe the likelihood function estimation problem as a classification problem. Pitting a Generator, who simulates fake data, against a Classifier, who tries to distinguish them from the real data, one obtains…

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Prior-Preconditioned Conjugate Gradient Method for Accelerated Gibbs Sampling in “Large n , Large p ” Bayesian Sparse Regression

以先验预条件共轭梯度法加速大样本高维贝叶斯稀疏回归的 Gibbs 抽样

In a modern observational study based on healthcare databases, the number of observations and of predictors typically range in the order of 10^{5}-10^{6} and of 10^{4}-10^{5}. Despite the large sample size, data rarely provide sufficient information to reliably estimate such a large number of parameters. Sparse regression techniques provide potential solutions, one notable approach being the Bayesian method based on shrinkage priors. In the "large n and large p" setting,…

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A Zero-Inflated Logistic Normal Multinomial Model for Extracting Microbial Compositions

用于提取微生物组成的零膨胀逻辑正态多项模型

High throughput sequencing data collected to study the microbiome provide information in the form of relative abundances and should be treated as compositions. Although many approaches including scaling and rarefaction have been proposed for converting raw count data into microbial compositions, most of these methods simply return zero values for zero counts. However, zeros can distort downstream analyses, and they can also pose problems for composition-aware methods. This…

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Fast Variational Bayes Methods for Multinomial Probit Models

多项 Probit 模型的快速变分贝叶斯方法

The multinomial probit model is often used to analyze choice behavior. However, estimation with existing Markov chain Monte Carlo (MCMC) methods is computationally costly, which limits its applicability to large choice datasets. This article proposes a variational Bayes method that is accurate and fast, even when a large number of choice alternatives and observations are considered. Variational methods usually require an analytical expression for the unnormalized posterior…

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Procurements with Bidder Asymmetry in Cost and Risk-Aversion

成本与风险厌恶不对称下的采购竞标

We propose an empirical method to analyze data from first-price procurements where bidders are asymmetric in their risk-aversion (CRRA) coefficients and distributions of private costs. Our Bayesian approach evaluates the likelihood by solving type-symmetric equilibria using the boundary-value method and integrates out unobserved heterogeneity through data augmentation. We study a new dataset from Russian government procurements focusing on the category of printing papers. We…

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Identification of SVAR Models by Combining Sign Restrictions With External Instruments

结合符号限制与外部工具变量识别 SVAR 模型

We discuss combining sign restrictions with information in external instruments (proxy variables) to identify structural vector autoregressive (SVAR) models. In one setting, we assume the availability of valid external instruments. Sign restrictions may then be used to identify further orthogonal shocks, or as an additional piece of information to pin down the shocks identified by the external instruments more precisely. In a second setting, we assume that proxy variables…

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Synthetic Control with Time Varying Coefficients A State Space Approach with Bayesian Shrinkage

时变系数合成控制:结合贝叶斯收缩的状态空间方法

Synthetic control methods are a popular tool for measuring the effects of policy interventions on a single treated unit. In practice, researchers create a counterfactual using a linear combination of untreated units that closely mimic the treated unit. Oftentimes, creating a synthetic control is not possible due to untreated units’ dynamic characteristics such as integrated processes or a time varying relationship. These are cases in which viewing the counterfactual…

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On backward smoothing algorithms

关于后向平滑算法

In the context of state-space models, skeleton-based smoothing algorithms rely on a backward sampling step, which by default, has a O(N2) complexity (where N is the number of particles). Existing improvements in the literature are unsatisfactory: a popular rejection sampling-based approach, as we shall show, might lead to badly behaved execution time; another rejection sampler with stopping lacks complexity analysis; yet another MCMC-inspired algorithm comes with no…

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Bayesian Artificial Neural Networks for frontier efficiency analysis

用于前沿效率分析的贝叶斯人工神经网络

Artificial neural networks have offered their share of econometric insights, given their power to model complex relationships. One area where they have not been readily deployed is the estimation of frontiers. The literature on frontier estimation has seen its share of research comparing and contrasting data envelopment analysis (DEA) and stochastic frontier analysis (SFA), the two workhorse estimators. These studies rely on both Monte Carlo experiments and actual data sets…

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Normalised latent measure factor models

归一化潜在测度因子模型

Abstract We propose a methodology for modelling and comparing probability distributions within a Bayesian nonparametric framework. Building on dependent normalised random measures, we consider a prior distribution for a collection of discrete random measures where each measure is a linear combination of a set of latent measures, interpretable as characteristic traits shared by different distributions, with positive random weights. The model is nonidentified and a method for…

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Covariate-Assisted Bayesian Graph Learning for Heterogeneous Data

异质数据的协变量辅助贝叶斯图学习

In a traditional Gaussian graphical model, data homogeneity is routinely assumed with no extra variables affecting the conditional independence. In modern genomic datasets, there is an abundance of auxiliary information, which often gets under-utilized in determining the joint dependency structure. In this article, we consider a Bayesian approach to model undirected graphs underlying heterogeneous multivariate observations with additional assistance from covariates. Building…

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Post-processed posteriors for sparse covariances

稀疏协方差矩阵的后处理后验

We consider Bayesian inference of sparse covariance matrices and propose a post-processed posterior. This method consists of two steps. In the first step, posterior samples are obtained from the conjugate inverse-Wishart posterior without considering the sparse structural assumption. The posterior samples are transformed in the second step to satisfy the sparse structural assumption through a generalized thresholding function. This non-traditional Bayesian procedure is…

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We modeled long memory with just one lag!

仅用一阶滞后建模长记忆

Two recent contributions have found conditions for large dimensional networks or systems to generate long memory in their individual components. We build on these and provide a multivariate methodology for modeling and forecasting series displaying long range dependence. We model long memory properties within a vector autoregressive system of order 1 and consider Bayesian estimation or ridge regression. For these, we derive a theory-driven parametric setting that informs a…

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High-dimensional conditionally Gaussian state space models with missing data

含缺失数据的高维条件高斯状态空间模型

We develop an efficient sampling approach for handling complex missing data patterns and a large number of missing observations in conditionally Gaussian state space models. Two important examples are dynamic factor models with unbalanced datasets and large Bayesian VARs with variables in multiple frequencies. A key observation underlying the proposed approach is that the joint distribution of the missing data conditional on the observed data is Gaussian. Furthermore, the…

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Large stochastic volatility in mean VARs

大型均值含随机波动率的 VAR 模型

Bayesian vector autoregressions with stochastic volatility in both the conditional mean and variance (SVMVARs) are widely used for studying the macroeconomic effects of uncertainty. Despite their popularity, intensive computational demands when estimating such models has constrained researchers to specifying a small number of latent volatilities, and made out-of-sample forecasting exercises impractical. In this paper, we propose an efficient Markov chain Monte Carlo (MCMC)…

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A generalized Bayes framework for probabilistic clustering

概率聚类的广义贝叶斯框架

Summary Loss-based clustering methods, such as k-means clustering and its variants, are standard tools for finding groups in data. However, the lack of quantification of uncertainty in the estimated clusters is a disadvantage. Model-based clustering based on mixture models provides an alternative approach, but such methods face computational problems and are highly sensitive to the choice of kernel. In this article we propose a generalized Bayes framework that bridges…

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Existence of matching priors on compact spaces

紧空间上匹配先验的存在性

Summary A matching prior at level $1-\alpha$ is a prior such that an associated $1-\alpha$ credible region is also a $1-\alpha$ confidence set. We study the existence of matching priors for general families of credible regions. Our main result gives topological conditions under which matching priors for specific families of credible regions exist. Informally, we prove that, on compact parameter spaces, a matching prior exists if the so-called rejection-probability function…

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Dividend suspensions and cash flows during the Covid-19 pandemic: A dynamic econometric model

新冠疫情期间的股息暂停与现金流:动态计量模型

Firms suspended dividend payments in unprecedented numbers in response to the outbreak of the Covid-19 pandemic. We develop a multivariate dynamic econometric model that allows dividend suspensions to affect the conditional mean, volatility, and jump probability of growth in daily industry-level dividends and demonstrate how the parameters of this model can be estimated using Bayesian Gibbs sampling methods. We find considerable heterogeneity across industries in the…

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