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贝叶斯:贝叶斯建模、后验推断与 MCMC。
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Exact Decoding of a Sequentially Markov Coalescent Model in Genetics

遗传学序列马尔可夫溯祖模型的精确解码

In statistical genetics, the sequentially Markov coalescent (SMC) is an important family of models for approximating the distribution of genetic variation data under complex evolutionary models. Methods based on SMC are widely used in genetics and evolutionary biology, with significant applications to genotype phasing and imputation, recombination rate estimation, and inferring population history. SMC allows for likelihood-based inference using hidden Markov models (HMMs),…

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Spectral Clustering, Bayesian Spanning Forest, and Forest Process

谱聚类、贝叶斯生成森林与森林过程

Spectral clustering views the similarity matrix as a weighted graph, and partitions the data by minimizing a graph-cut loss. Since it minimizes the across-cluster similarity, there is no need to model the distribution within each cluster. As a result, one reduces the chance of model misspecification, which is often a risk in mixture model-based clustering. Nevertheless, compared to the latter, spectral clustering has no direct ways of quantifying the clustering uncertainty…

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Variational Inference for Large Bayesian Vector Autoregressions

大型贝叶斯向量自回归的变分推断

We propose a novel variational Bayes approach to estimate high-dimensional Vector Autoregressive (VAR) models with hierarchical shrinkage priors.Our approach does not rely on a conventional structural representation of the parameter space for posterior inference.Instead, we elicit hierarchical shrinkage priors directly on the matrix of regression coefficients so that (a) the prior structure maps into posterior inference on the reduced-form transition matrix and (b) posterior…

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An Empirical Bayes Approach to Controlling the False Discovery Exceedance

控制错误发现比例超限概率的经验贝叶斯方法

In large-scale multiple hypothesis testing problems, the false discovery exceedance (FDX) provides a desirable alternative to the widely used false discovery rate (FDR) when the false discovery proportion (FDP) is highly variable. We develop an empirical Bayes approach to control the FDX. We show that, for independent hypotheses from a two-group model and dependent hypotheses from a Gaussian model fulfilling the exchangeability condition, an oracle decision rule based on…

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Regulatory arbitrage or random errors? Implications of race prediction algorithms in fair lending analysis

监管套利还是随机误差?种族预测算法对公平信贷分析的影响

When race is not directly observed, regulators and analysts commonly predict it using algorithms based on last name and address. In small business lending—where regulators assess fair lending law compliance using the Bayesian Improved Surname Geocoding (BISG) algorithm—we document large prediction errors among Black Americans. The errors bias measured racial disparities in loan approval rates downward by 43%, with greater bias for traditional vs. fintech lenders. Regulation…

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Dimension-free mixing times of Gibbs samplers for Bayesian hierarchical models

贝叶斯层级模型中 Gibbs 采样器的维度无关混合时间

Gibbs samplers are popular algorithms to approximate posterior distributions arising from Bayesian hierarchical models. Despite their popularity and good empirical performance, however, there are still relatively few quantitative results on their convergence properties, for example, much less than for gradient-based sampling methods. In this work, we analyse the behaviour of total variation mixing times of Gibbs samplers targeting hierarchical models using tools from…

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ADVANCES IN USING VECTOR AUTOREGRESSIONS TO ESTIMATE STRUCTURAL MAGNITUDES

利用向量自回归估计结构量的进展

This paper surveys recent advances in drawing structural conclusions from vector autoregressions (VARs), providing a unified perspective on the role of prior knowledge. We describe the traditional approach to identification as a claim to have exact prior information about the structural model and propose Bayesian inference as a way to acknowledge that prior information is imperfect or subject to error. We raise concerns from both a frequentist and a Bayesian perspective…

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Bayesian collapsed Gibbs sampling for a stochastic volatility model with a Dirichlet process mixture

含狄利克雷过程混合的随机波动模型:贝叶斯折叠Gibbs采样

Summary This paper replicates the results of the stochastic volatility–Dirichlet process mixture (SV‐DPM) models proposed in Jensen and Maheu (2010) in both a narrow and a wide sense. By using a normal‐Wishart prior and the collapsed Gibbs sampling method, our algorithm can be applied for more general settings, and it is more efficient for sampling the Dirichlet process mixture. For the stochastic volatility component, we adopt the method in Chan (2017) to further increase…

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Empirical evidence on the Euler equation for investment in the US

美国投资 Euler 方程的实证证据

Summary Is the typical specification of the Euler equation for investment employed in dynamic stochastic general equilibrium (DSGE) models consistent with aggregate macro data? The answer is yes using state‐of‐the‐art econometric methods that are robust to weak instruments and exploit information in possible structural changes. Unfortunately, however, there is very little information about the values of the parameters in aggregate data because investment is unresponsive to…

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An eigenvector-assisted estimation framework for signal-plus-noise matrix models

信号加噪声矩阵模型的特征向量辅助估计框架

Summary In this paper, we develop an eigenvector-assisted estimation framework for a collection of signal-plus-noise matrix models arising in high-dimensional statistics and many applications. The framework is built upon a novel asymptotically unbiased estimating equation using the leading eigenvectors of the data matrix. However, the estimator obtained by directly solving the estimating equation could be numerically unstable in practice and lacks robustness against model…

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Retrospective causal inference with multiple effect variables

基于多个结果变量的回溯因果推断

Summary As highlighted in Dawid (2000) and Pearl & Mackenzie (2018), deducing the causes of given effects is a more challenging problem than evaluating the effects of causes in causal inference. Lu et al. (2023) proposed an approach for deducing causes of a single effect variable based on posterior causal effects. In many applications, there are multiple effect variables, and they can be used simultaneously to more accurately deduce the causes. To retrospectively deduce…

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Order-based structure learning without score equivalence

不依赖评分等价性的基于排序的结构学习

Summary We propose an empirical Bayes formulation of the structure learning problem, where the prior specification assumes that all node variables have the same error variance, an assumption known to ensure the identifiability of the underlying causal directed acyclic graph. To facilitate efficient posterior computation, we approximate the posterior probability of each ordering by that of a best directed acyclic graph model, which naturally leads to an order-based Markov…

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M.N.M. van Lieshout and C. Lu’s contribution to the Discussion of ‘the Discussion Meeting on Probabilistic and statistical aspects of machine learning’

van Lieshout 与 Lu 对机器学习概率统计讨论会论文的讨论意见

We congratulate Professors Li, Fearnhead, Fryzlewics, and Wang on their fine work that represents classic test statistics for change-point detection as a neural network-based classifier and develops improved offline detection algorithms for historical, labelled data. The paper focuses on real-valued observation vectors in a temporal regression model with training data being either labelled historical data or obtained by simulation from a model. In many applications, though,…

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Gilbert MacKenzie’s contribution to the Discussion of ‘the Discussion Meeting on Probabilistic and statistical aspects of machine learning’

Gilbert MacKenzie 对机器学习概率与统计讨论会的评论

I would like first to congratulate both authors on presenting their very stimulating work in the spirit of the conference’s theme of statisticians and machine learners working in alliance. There is no doubt in my mind that collaboration will lead to better, more parsimonious, models. My comments relate, mainly, to the second discussant’s points on over-parametrization. If a feed-forward neural net (Ripley, 1994) is denoted by Net(x,θ)⁠, where x is the input layer and ϕ is…

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Proposer of the vote of thanks and contribution to the Discussion of ‘the Discussion Meeting on Probabilistic and statistical aspects of machine learning’

关于“机器学习的概率与统计方面”讨论会的致谢提议与讨论意见

Computational statistics and machine learning (ML) are closely related, and there are many opportunities for cross-fertilization of ideas between the two fields. Both can benefit from greater interaction, and the two papers being discussed here highlight some ways that this can happen. The main focus of this paper is offline detection of a single change-point using labelled training data. Interest is in the automatic generation of new offline detection methods using neural…

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Bayesian predictive decision synthesis

贝叶斯预测决策综合

Abstract Decision-guided perspectives on model uncertainty expand traditional statistical thinking about managing, comparing, and combining inferences from sets of models. Bayesian predictive decision synthesis (BPDS) advances conceptual and theoretical foundations, and defines new methodology that explicitly integrates decision-analytic outcomes into the evaluation, comparison, and potential combination of candidate models. BPDS extends recent theoretical and practical…

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Heterogeneity Analysis on Multi-State Brain Functional Connectivity and Adolescent Neurocognition

多状态脑功能连接与青少年认知的异质性分析

Brain functional connectivity or connectome, a unique measure for brain functional organization, provides a great potential to explain the neurobiological underpinning of behavioral profiles. Existing connectome-based analyses highly concentrate on brain activities under a single cognitive state, and fail to consider heterogeneity when attempting to characterize brain-to-behavior relationships. In this work, we study the complex impact of multi-state functional connectivity…

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Survival Mixed Membership Blockmodel

生存混合成员区块模型

Whenever we send a message via a channel such as e-mail, Facebook, WhatsApp, WeChat, or LinkedIn, we care about the response rate—the probability that our message will receive a response—and the response time—how long it will take to receive a reply. Recent studies have made considerable efforts to model the sending behaviors of messages in social networks with point processes. However, statistical research on modeling response rates and response times on social networks is…

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A Hierarchical Expected Improvement Method for Bayesian Optimization

用于贝叶斯优化的层级期望改进方法

The Expected Improvement (EI) method, proposed by Jones, Schonlau, andWelch, is a widely used Bayesian optimization method, which makes use of a fitted Gaussian process model for efficient black-box optimization. However, one key drawback of EI is that it is overly greedy in exploiting the fitted Gaussian process model for optimization, which results in suboptimal solutions even with large sample sizes. To address this, we propose a new hierarchical EI (HEI) framework, which…

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Sparse Convoluted Rank Regression in High Dimensions

高维稀疏卷积秩回归

Wang et al. studied the high-dimensional sparse penalized rank regression and established its nice theoretical properties. Compared with the least squares, rank regression can have a substantial gain in estimation efficiency while maintaining a minimal relative efficiency of 86.4%. However, the computation of penalized rank regression can be very challenging for high-dimensional data, due to the highly nonsmooth rank regression loss. In this work we view the rank regression…

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Bayesian Conditional Transformation Models

贝叶斯条件变换模型

Recent developments in statistical regression methodology shift away from pure mean regression toward distributional regression models. One important strand thereof is that of conditional transformation models (CTMs). CTMs infer the entire conditional distribution directly by applying a transformation function to the response conditionally on a set of covariates toward a simple log-concave reference distribution. Thereby, CTMs allow not only variance, kurtosis or skewness…

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Scalable Bayesian Transport Maps for High-Dimensional Non-Gaussian Spatial Fields

高维非高斯空间场的可扩展贝叶斯输运映射

A multivariate distribution can be described by a triangular transport map from the target distribution to a simple reference distribution.We propose Bayesian nonparametric inference on the transport map by modeling its components using Gaussian processes.This enables regularization and uncertainty quantification of the map estimation, while resulting in a closed-form and invertible posterior map.We then focus on inferring the distribution of a nonstationary spatial field…

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Cohesion and Repulsion in Bayesian Distance Clustering

贝叶斯距离聚类中的凝聚与排斥

Clustering in high-dimensions poses many statistical challenges. While traditional distance-based clustering methods are computationally feasible, they lack probabilistic interpretation and rely on heuristics for estimation of the number of clusters. On the other hand, probabilistic model-based clustering techniques often fail to scale and devising algorithms that are able to effectively explore the posterior space is an open problem. Based on recent developments in Bayesian…

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Fixed-Domain Posterior Contraction Rates for Spatial Gaussian Process Model with Nugget

含块金项的空间高斯过程模型:固定区域下的后验收缩率

Spatial Gaussian process regression models typically contain finite dimensional covariance parameters that need to be estimated from the data. We study the Bayesian estimation of covariance parameters including the nugget parameter in a general class of stationary covariance functions under fixed-domain asymptotics, which is theoretically challenging due to the increasingly strong dependence among spatial observations. We propose a novel adaptation of the Schwartz’s…

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