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Nonparametric Independence Screening in Sparse Ultra-High-Dimensional Varying Coefficient Models

稀疏超高维变系数模型中的非参数独立筛选

The varying-coefficient model is an important nonparametric statistical model that allows us to examine how the effects of covariates vary with exposure variables. When the number of covariates is big, the issue of variable selection arrives. In this paper, we propose and investigate marginal nonparametric screening methods to screen variables in ultra-high dimensional sparse varying-coefficient models. The proposed nonparametric independence screening (NIS) selects…

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Optimal Tests of Treatment Effects for the Overall Population and Two Subpopulations in Randomized Trials, Using Sparse Linear Programming

用稀疏线性规划优化随机试验总体与两个亚组的治疗效应检验

We propose new, optimal methods for analyzing randomized trials, when it is suspected that treatment effects may differ in two predefined subpopulations. Such subpopulations could be defined by a biomarker or risk factor measured at baseline. The goal is to simultaneously learn which subpopulations benefit from an experimental treatment, while providing strong control of the familywise Type I error rate. We formalize this as a multiple testing problem and show it is…

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Bayesian Aggregation of Order-Based Rank Data

基于排序数据的贝叶斯聚合

Rank aggregation, that is, combining several ranking functions (called base rankers) to get aggregated, usually stronger rankings of a given set of items, is encountered in many disciplines. Most methods in the literature assume that base rankers of interest are equally reliable. It is very common in practice, however, that some rankers are more informative and reliable than others. It is desirable to distinguish high quality base rankers from low quality ones and treat them…

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Sequential Lasso Cum EBIC for Feature Selection With Ultra-High Dimensional Feature Space

结合扩展贝叶斯信息准则的序贯 Lasso 超高维特征选择

In this article, we propose a method called sequential Lasso (SLasso) for feature selection in sparse high-dimensional linear models. The SLasso selects features by sequentially solving partially penalized least squares problems where the features selected in earlier steps are not penalized. The SLasso uses extended BIC (EBIC) as the stopping rule. The procedure stops when EBIC reaches a minimum. The asymptotic properties of SLasso are considered when the dimension of the…

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A Bayesian Nonparametric Modeling Framework for Developmental Toxicity Studies

发育毒性研究的贝叶斯非参数混合建模框架

We develop a Bayesian nonparametric mixture modeling framework for replicated count responses in dose-response settings. We explore this methodology for modeling and risk assessment in developmental toxicity studies, where the primary objective is to determine the relationship between the level of exposure to a toxic chemical and the probability of a physiological or biochemical response, or death. Data from these experiments typically involve features that cannot be…

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Estimation and Accuracy After Model Selection

模型选择后的估计与精度评估

Classical statistical theory ignores model selection in assessing estimation accuracy. Here we consider bootstrap methods for computing standard errors and confidence intervals that take model selection into account. The methodology involves bagging, also known as bootstrap smoothing, to tame the erratic discontinuities of selection-based estimators. A useful new formula for the accuracy of bagging then provides standard errors for the smoothed estimators. Two examples,…

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Source-Sink Reconstruction Through Regularized Multicomponent Regression Analysis—With Application to Assessing Whether North Sea Cod Larvae Contributed to Local Fjord Cod in Skagerrak

通过正则化多分量回归重建源汇关系:北海鳕鱼幼体迁移应用

The problem of reconstructing the source-sink dynamics arises in many biological systems. Our research is motivated by marine applications where newborns are passively dispersed by ocean currents from several potential spawning sources to settle in various nursery regions that collectively constitute the sink. The reconstruction of the sparse source-sink linkage pattern, that is, to identify which sources contribute to which regions in the sink, is a challenging task in…

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A Bivariate Model for Simultaneous Testing in Bioinformatics Data

生物信息学数据中用于同时检验的二元模型

We develop a novel approach for testing treatment effects in high-throughput data. Most previous works on this topic focused on testing for differences between the means, but recently it has been recognized that testing for differential variation is probably as important. We take it a step further, and introduce a bivariate model modeling strategy which accounts for both differential expression and differential variation. Our model-based approach, in which the differential…

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Estimating Risk With Time-to-Event Data: An Application to the Women’s Health Initiative

事件发生时间数据的风险估计:妇女健康倡议应用

Accurate and individualized risk prediction is critical for population control of chronic diseases such as cancer and cardiovascular disease. Large cohort studies provide valuable resources for building risk prediction models, as the risk factors are collected at the baseline and subjects are followed over time until disease occurrence or termination of the study. However, for rare diseases the baseline risk may not be estimated reliably based on cohort data only, due to…

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Bayesian Forecasting of Cohort Fertility

出生队列生育率的贝叶斯预测

There are signs that fertility in rich countries may have stopped declining, but this depends critically on whether women currently in reproductive ages are postponing or reducing lifetime fertility. Analysis of average completed family sizes requires forecasts of remaining fertility for women born 1970–1995. We propose a Bayesian model for fertility that incorporates a priori information about patterns over age and time. We use a new dataset, the Human Fertility Database…

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Using Data Augmentation to Facilitate Conduct of Phase I–II Clinical Trials With Delayed Outcomes

用数据增广支持结局延迟的一至二期临床试验

A practical impediment in adaptive clinical trials is that outcomes must be observed soon enough to apply decision rules to choose treatments for new patients. For example, if outcomes take up to six weeks to evaluate and the accrual rate is one patient per week, on average three new patients will be accrued while waiting to evaluate the outcomes of the previous three patients. The question is how to treat the new patients. This logistical problem persists throughout the…

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A Bayesian Nonparametric Regression Model With Normalized Weights: A Study of Hippocampal Atrophy in Alzheimer’s Disease

带归一化权重的贝叶斯非参数回归:阿尔茨海默病海马萎缩研究

Hippocampal volume is one of the best established biomarkers for Alzheimer’s disease. However, for appropriate use in clinical trials research, the evolution of hippocampal volume needs to be well understood. Recent theoretical models propose a sigmoidal pattern for its evolution. To support this theory, the use of Bayesian nonparametric regression mixture models seems particularly suitable due to the flexibility that models of this type can achieve and the unsatisfactory…

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Flexible Marginal Structural Models for Estimating the Cumulative Effect of a Time-Dependent Treatment on the Hazard: Reassessing the Cardiovascular Risks of Didanosine Treatment in the Swiss HIV Cohort Study

时变治疗累积风险效应的灵活边际结构模型:重新评估去羟肌苷的心血管风险

The association between antiretroviral treatment and cardiovascular disease (CVD) risk in HIV-positive persons has been the subject of much debate since the Data collection on Adverse events of Anti-HIV Drugs (D:A:D) study reported that recent use of two antiretroviral drugs, abacavir (ABC) and didanosine (DDI), was associated with increased risk. We focus on the potential impact of DDI use, as this drug has not been as studied intensively as ABC. We propose a flexible…

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Selection of Mixed Copula Model via Penalized Likelihood

通过惩罚似然选择混合 Copula 模型

A fundamental issue of applying a copula method in applications is how to choose an appropriate copula function for a given problem. In this article we address this issue by proposing a new copula selection approach via penalized likelihood plus a shrinkage operator. The proposed method selects an appropriate copula function and estimates the related parameters simultaneously. We establish the asymptotic properties of the proposed penalized likelihood estimator, including…

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Self-Excited Threshold Poisson Autoregression

自激门限泊松自回归

This article studies theory and inference of an observation-driven model for time series of counts. It is assumed that the observations follow a Poisson distribution conditioned on an accompanying intensity process, which is equipped with a two-regime structure according to the magnitude of the lagged observations. Generalized from the Poisson autoregression, it allows more flexible, and even negative correlation, in the observations, which cannot be produced by the…

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Simulated Stochastic Approximation Annealing for Global Optimization With a Square-Root Cooling Schedule

采用平方根降温的模拟随机逼近退火全局优化

Simulated annealing has been widely used in the solution of optimization problems. As known by many researchers, the global optima cannot be guaranteed to be located by simulated annealing unless a logarithmic cooling schedule is used. However, the logarithmic cooling schedule is so slow that no one can afford to use this much CPU time. This article proposes a new stochastic optimization algorithm, the so-called simulated stochastic approximation annealing algorithm, which…

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Spectral Density Ratio Models for Multivariate Extremes

多元极值的谱密度比模型

The modeling of multivariate extremes has received increasing recent attention because of its importance in risk assessment. In classical statistics of extremes, the joint distribution of two or more extremes has a nonparametric form, subject to moment constraints. This article develops a semiparametric model for the situation where several multivariate extremal distributions are linked through the action of a covariate on an unspecified baseline distribution, through a…

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Adaptive Multivariate Global Testing

自适应多变量整体检验

We present a methodology for dealing with recent challenges in testing global hypotheses using multivariate observations. The proposed tests target situations, often arising in emerging applications of neuroimaging, where the sample size n is relatively small compared with the observations’ dimension K. We employ adaptive designs allowing for sequential modifications of the test statistics adapting to accumulated data. The adaptations are optimal in the sense of maximizing…

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Testing Independence Among a Large Number of High-Dimensional Random Vectors

大量高维随机向量之间的独立性检验

Capturing dependence among a large number of high-dimensional random vectors is a very important and challenging problem. By arranging n random vectors of length p in the form of a matrix, we develop a linear spectral statistic of the constructed matrix to test whether the n random vectors are independent or not. Specifically, the proposed statistic can also be applied to n random vectors, each of whose elements can be written as either a linear stationary process or a…

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A Class of Hazard Rate Mixtures for Combining Survival Data From Different Experiments

用于合并不同实验生存数据的一类风险率混合模型

Mixture models for hazard rate functions are widely used tools for addressing the statistical analysis of survival data subject to a censoring mechanism. The present article introduced a new class of vectors of random hazard rate functions that are expressed as kernel mixtures of dependent completely random measures. This leads to define dependent nonparametric prior processes that are suitably tailored to draw inferences in the presence of heterogenous observations. Besides…

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EMVS: The EM Approach to Bayesian Variable Selection

EMVS:基于 EM 算法的贝叶斯变量选择

Despite rapid developments in stochastic search algorithms, the practicality of Bayesian variable selection methods has continued to pose challenges. High-dimensional data are now routinely analyzed, typically with many more covariates than observations. To broaden the applicability of Bayesian variable selection for such high-dimensional linear regression contexts, we propose EMVS, a deterministic alternative to stochastic search based on an EM algorithm which exploits a…

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Nonparametric Regression for Spherical Data

球面数据的非参数回归

We develop nonparametric smoothing for regression when both the predictor and the response variables are defined on a sphere of whatever dimension. A local polynomial fitting approach is pursued, which retains all the advantages in terms of rate optimality, interpretability, and ease of implementation widely observed in the standard setting. Our estimates have a multi-output nature, meaning that each coordinate is separately estimated, within a scheme of a regression with a…

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Convex Optimization, Shape Constraints, Compound Decisions, and Empirical Bayes Rules

凸优化、形状约束、复合决策与经验贝叶斯规则

Estimation of mixture densities for the classical Gaussian compound decision problem and their associated (empirical) Bayes rules is considered from two new perspectives. The first, motivated by Brown and Greenshtein, introduces a nonparametric maximum likelihood estimator of the mixture density subject to a monotonicity constraint on the resulting Bayes rule. The second, motivated by Jiang and Zhang, proposes a new approach to computing the Kiefer–Wolfowitz nonparametric…

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Group LASSO for Structural Break Time Series

结构突变时间序列的组 LASSO

Consider a structural break autoregressive (SBAR) process where j = 1, …, m + 1, {t1, …, tm} are change-points, 1 = t0 < t1 < ⋅⋅⋅ < tm + 1 = n + 1, σ( · ) is a measurable function on , and {ϵt} are white noise with unit variance. In practice, the number of change-points m is usually assumed to be known and small, because a large m would involve a huge amount of computational burden for parameters estimation. By reformulating the problem in a variable selection context, the…

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