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Statistical Inference in Hidden Markov Models Using k -Segment Constraints

利用 k 段约束进行隐马尔可夫模型统计推断

Hidden Markov models (HMMs) are one of the most widely used statistical methods for analyzing sequence data. However, the reporting of output from HMMs has largely been restricted to the presentation of the most-probable (MAP) hidden state sequence, found via the Viterbi algorithm, or the sequence of most probable marginals using the forward–backward algorithm. In this article, we expand the amount of information we could obtain from the posterior distribution of an HMM by…

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Pairwise Likelihood Inference for Nested Hidden Markov Chain Models for Multilevel Longitudinal Data

多层纵向数据嵌套隐马尔可夫链模型的成对似然推断

In the context of multilevel longitudinal data, where sample units are collected in clusters, an important aspect that should be accounted for is the unobserved heterogeneity between sample units and between clusters. For this aim, we propose an approach based on nested hidden (latent) Markov chains, which are associated with every sample unit and with every cluster. The approach allows us to account for the previously mentioned forms of unobserved heterogeneity in a dynamic…

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Instrumental Variables Estimation With Some Invalid Instruments and its Application to Mendelian Randomization

部分工具变量无效时的工具变量估计及孟德尔随机化应用

Instrumental variables have been widely used for estimating the causal effect between exposure and outcome. Conventional estimation methods require complete knowledge about all the instruments’ validity; a valid instrument must not have a direct effect on the outcome and not be related to unmeasured confounders. Often, this is impractical as highlighted by Mendelian randomization studies where genetic markers are used as instruments and complete knowledge about instruments’…

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A Potential Tale of Two-by-Two Tables From Completely Randomized Experiments

Causal inference in completely randomized treatment-control studies with binary outcomes is discussed from Fisherian, Neymanian, and Bayesian perspectives, using the potential outcomes model. A randomization-based justification of Fisher’s exact test is provided. Arguing that the crucial assumption of constant causal effect is often unrealistic, and holds only for extreme cases, some new asymptotic and Bayesian inferential procedures are proposed. The proposed procedures…

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Rerandomization to Balance Tiers of Covariates

通过重随机化平衡不同重要性层级的协变量

When conducting a randomized experiment, if an allocation yields treatment groups that differ meaningfully with respect to relevant covariates, groups should be rerandomized. The process involves specifying an explicit criterion for whether an allocation is acceptable, based on a measure of covariate balance, and rerandomizing units until an acceptable allocation is obtained. Here we illustrate how rerandomization could have improved the design of an already conducted…

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Self-Normalization for Time Series: A Review of Recent Developments

时间序列自归一化:近期进展综述

This article reviews some recent developments on the inference of time series data using the self-normalized approach. We aim to provide a detailed discussion about the use of self-normalization in different contexts and highlight distinctive feature associated with each problem and connections among these recent developments. The topics covered include: confidence interval construction for a parameter in a weakly dependent stationary time series setting, change point…

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Bayesian Phylogenetic Inference Using a Combinatorial Sequential Monte Carlo Method

利用组合序贯蒙特卡洛方法进行贝叶斯系统发育推断

The application of Bayesian methods to large-scale phylogenetics problems is increasingly limited by computational issues, motivating the development of methods that can complement existing Markov chain Monte Carlo (MCMC) schemes. Sequential Monte Carlo (SMC) methods are approximate inference algorithms that have become very popular for time series models. Such methods have been recently developed to address phylogenetic inference problems but currently available techniques…

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Temporal Autocorrelation-Based Beamforming With MEG Neuroimaging Data

基于时间自相关的脑磁图波束形成方法

Characterizing the brain source activity using magnetoencephalography (MEG) requires solving an ill-posed inverse problem.Most source reconstruction procedures are performed in terms of power comparison.However, in the presence of voxel-specific noises, the direct power analysis can be misleading due to the power distortion as suggested by our multiple trial MEG study on a face-perception experiment.To tackle the issue, we propose a temporal autocorrelation-based method for…

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Nonparametric and Parametric Estimators of Prevalence From Group Testing Data With Aggregated Covariates

协变量聚合的群组检测数据中患病率的参数与非参数估计

Group testing is a technique employed in large screening studies involving infectious disease, where individuals in the study are grouped before being observed. Parametric and nonparametric estimators of conditional prevalence have been developed in the group testing literature, in the case where the binary variable indicating the disease status is available only for the group, but the explanatory variable is observed for each individual. However, for reasons such as the…

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Bayesian Partition Models for Identifying Expression Quantitative Trait Loci

识别表达数量性状位点的贝叶斯划分模型

Expression quantitative trait loci (eQTLs) are genomic locations associated with changes of expression levels of certain genes. By assaying gene expressions and genetic variations simultaneously on a genome-wide scale, scientists wish to discover genomic loci responsible for expression variations of a set of genes. The task can be viewed as a multivariate regression problem with variable selection on both responses (gene expression) and covariates (genetic variations),…

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Reinforcement Learning Trees

In this paper, we introduce a new type of tree-based method, reinforcement learning trees (RLT), which exhibits significantly improved performance over traditional methods such as random forests (Breiman, 2001) under high-dimensional settings. The innovations are three-fold. First, the new method implements reinforcement learning at each selection of a splitting variable during the tree construction processes. By splitting on the variable that brings the greatest future…

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Wanna Get Away? Regression Discontinuity Estimation of Exam School Effects Away From the Cutoff

远离断点的考试选拔学校效应:回归不连续识别与估计

In regression discontinuity (RD) studies exploiting an award or admissions cutoff, causal effects are nonparametrically identified for those near the cutoff. The effect of treatment on inframarginal applicants is also of interest, but identification of such effects requires stronger assumptions than those required for identification at the cutoff. This article discusses RD identification and estimation away from the cutoff. Our identification strategy exploits the…

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Optimal Data-Driven Regression Discontinuity Plots

最优数据驱动的回归不连续图

Exploratory data analysis plays a central role in applied statistics and econometrics. In the popular regression-discontinuity (RD) design, the use of graphical analysis has been strongly advocated because it provides both easy presentation and transparent validation of the design. RD plots are nowadays widely used in applications, despite its formal properties being unknown: these plots are typically presented employing ad hoc choices of tuning parameters, which makes these…

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Treatment Effects With Censoring and Endogeneity

删失与内生性下的处理效应

This article develops a nonparametric approach to identification and estimation of treatment effects on censored outcomes when treatment may be endogenous and have arbitrarily heterogenous effects. Identification is based on an instrumental variable that satisfies the exclusion and monotonicity conditions standard in the local average treatment effects framework. The article proposes a censored quantile treatment effects estimator, derives its asymptotic distribution, and…

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Small Area Estimation With Uncertain Random Effects

具有不确定随机效应的小区域估计

Random effects models play an important role in model-based small area estimation. Random effects account for any lack of fit of a regression model for the population means of small areas on a set of explanatory variables. In a recent article, Datta, Hall, and Mandal showed that if the random effects can be dispensed with via a suitable test, then the model parameters and the small area means may be estimated with substantially higher accuracy. The work of Datta, Hall, and…

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A Permutation Approach to Testing Interactions for Binary Response by Comparing Correlations Between Classes

通过类别间相关性比较检验二元响应交互作用的置换方法

To date testing interactions in high dimensions is a challenging task. Existing methods often have issues with sensitivity to modeling assumptions and heavily asymptotic nominal p-values. To help alleviate these issues, we propose a permutation-based method for testing marginal interactions with a binary response. Our method searches for pairwise correlations that differ between classes. In this article, we compare our method on real and simulated data to the standard…

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Conditional Distance Correlation

Statistical inference on conditional dependence is essential in many fields including genetic association studies and graphical models. The classic measures focus on linear conditional correlations, and are incapable of characterizing non-linear conditional relationship including non-monotonic relationship. To overcome this limitation, we introduces a nonparametric measure of conditional dependence for multivariate random variables with arbitrary dimensions. Our measure…

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On Asymptotic Distributions and Confidence Intervals for LIFT Measures in Data Mining

数据挖掘 LIFT 指标的渐近分布与置信区间

A LIFT measure, such as the response rate, lift, or the percentage of captured response, is a fundamental measure of effectiveness for a scoring rule obtained from data mining, which is estimated from a set of validation data. In this article, we study how to construct confidence intervals of the LIFT measures. We point out the subtlety of this task and explain how simple binomial confidence intervals can have incorrect coverage probabilities, due to omitting variation from…

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Smoothed and Corrected Score Approach to Censored Quantile Regression With Measurement Errors

测量误差下删失分位数回归的平滑与校正得分方法

Censored quantile regression is an important alternative to the Cox proportional hazards model in survival analysis. In contrast to the usual central covariate effects, quantile regression can effectively characterize the covariate effects at different quantiles of the survival time. When covariates are measured with errors, it is known that naively treating mismeasured covariates as error-free would result in estimation bias. Under censored quantile regression, we propose…

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A High-Dimensional Nonparametric Multivariate Test for Mean Vector

高维均值向量的非参数多元检验

This work is concerned with testing the population mean vector of nonnormal high-dimensional multivariate data. Several tests for high-dimensional mean vector, based on modifying the classical Hotelling T2 test, have been proposed in the literature. Despite their usefulness, they tend to have unsatisfactory power performance for heavy-tailed multivariate data, which frequently arise in genomics and quantitative finance. This article proposes a novel high-dimensional…

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Latent Space Models for Dynamic Networks

Dynamic networks are used in a variety of fields to represent the structure and evolution of the relationships between entities. We present a model which embeds longitudinal network data as trajectories in a latent Euclidean space. We propose Markov chain Monte Carlo (MCMC) algorithm to estimate the model parameters and latent positions of the actors in the network. The model yields meaningful visualization of dynamic networks, giving the researcher insight into the…

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Semiparametric Pseudo-Likelihoods in Generalized Linear Models With Nonignorable Missing Data

不可忽略缺失数据下广义线性模型的半参数伪似然

We consider identifiability and estimation in a generalized linear model in which the response variable and some covariates have missing values and the missing data mechanism is nonignorable and unspecified. We adopt a pseudo-likelihood approach that makes use of an instrumental variable to help identifying unknown parameters in the presence of nonignorable missing data. Explicit conditions for the identifiability of parameters are given. Some asymptotic properties of the…

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Robust Filtering

稳健滤波

Filtering methods are powerful tools to estimate the hidden state of a state-space model from observations available in real time. However, they are known to be highly sensitive to the presence of small misspecifications of the underlying model and to outliers in the observation process. In this article, we show that the methodology of robust statistics can be adapted to sequential filtering. We define a filter as being robust if the relative error in the state distribution…

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Testing the Number of Components in Normal Mixture Regression Models

正态混合回归模型的成分数量检验

Testing the number of components in finite normal mixture models is a long-standing challenge because of its nonregularity. This article studies likelihood-based testing of the number of components in normal mixture regression models with heteroscedastic components. We construct a likelihood-based test of the null hypothesis of m0 components against the alternative hypothesis of m0 + 1 components for any m0. The null asymptotic distribution of the proposed modified EM test…

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