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i Fusion: Individualized Fusion Learning

iFusion:个体化融合学习

Inferences from different data sources can often be fused together, a process referred to as “fusion learning,” to yield more powerful findings than those from individual data sources alone. Effective fusion learning approaches are in growing demand as increasing number of data sources have become easily available in this big data era. This article proposes a new fusion learning approach, called “iFusion,” for drawing efficient individualized inference by fusing learnings…

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Modeling Between-Study Heterogeneity for Improved Replicability in Gene Signature Selection and Clinical Prediction

建模研究间异质性以提高基因特征选择与临床预测的可重复性

In the genomic era, the identification of gene signatures associated with disease is of significant interest. Such signatures are often used to predict clinical outcomes in new patients and aid clinical decision-making. However, recent studies have shown that gene signatures are often not replicable. This occurrence has practical implications regarding the generalizability and clinical applicability of such signatures. To improve replicability, we introduce a novel approach…

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Genetic Variant Set-Based Tests Using the Generalized Berk–Jones Statistic With Application to a Genome-Wide Association Study of Breast Cancer

基于广义Berk–Jones统计量的遗传变异集合检验及乳腺癌应用

Studying the effects of groups of single nucleotide polymorphisms (SNPs), as in a gene, genetic pathway, or network, can provide novel insight into complex diseases like breast cancer, uncovering new genetic associations and augmenting the information that can be gleaned from studying SNPs individually. Common challenges in set-based genetic association testing include weak effect sizes, correlation between SNPs in a SNP-set, and scarcity of signals, with individual SNP…

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Fine-Scale Spatiotemporal Air Pollution Analysis Using Mobile Monitors on Google Street View Vehicles

利用谷歌街景车辆移动监测器进行精细时空空气污染分析

People are increasingly concerned with understanding their personal environment, including possible exposure to harmful air pollutants. In order to make informed decisions on their day-to-day activities, they are interested in real-time information on a localized scale. Publicly available, fine-scale, high-quality air pollution measurements acquired using mobile monitors represent a paradigm shift in measurement technologies. A methodological framework utilizing these…

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Bayesian Nonparametric Policy Search With Application to Periodontal Recall Intervals

贝叶斯非参数策略搜索及牙周复诊间隔应用

Tooth loss from periodontal disease is a major public health burden in the United States. Standard clinical practice is to recommend a dental visit every six months; however, this practice is not evidence-based, and poor dental outcomes and increasing dental insurance premiums indicate room for improvement. We consider a tailored approach that recommends recall time based on patient characteristics and medical history to minimize disease progression without increasing…

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Multivariate Bayesian Predictive Synthesis in Macroeconomic Forecasting

宏观经济预测中的多变量贝叶斯预测综合

We present new methodology and a case study in use of a class of Bayesian predictive synthesis (BPS) models for multivariate time series forecasting. This extends the foundational BPS framework to the multivariate setting, with detailed application in the topical and challenging context of multistep macroeconomic forecasting in a monetary policy setting. BPS evaluates—sequentially and adaptively over time—varying forecast biases and facets of miscalibration of individual…

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Local Likelihood Estimation of Complex Tail Dependence Structures, Applied to U.S. Precipitation Extremes

复杂尾部依赖结构的局部似然估计:美国极端降水应用

To disentangle the complex nonstationary dependence structure of precipitation extremes over the entire contiguous United States (U.S.), we propose a flexible local approach based on factor copula models. Our subasymptotic spatial modeling framework yields nontrivial tail dependence structures, with a weakening dependence strength as events become more extreme; a feature commonly observed with precipitation data but not accounted for in classical asymptotic extreme-value…

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Tests for Scale Changes Based on Pairwise Differences

基于成对差分的尺度变化检验

In many applications it is important to know whether the amount of fluctuation in a series of observations changes over time. In this article, we investigate different tests for detecting changes in the scale of mean-stationary time series. The classical approach, based on the CUSUM test applied to the squared centered observations, is very vulnerable to outliers and impractical for heavy-tailed data, which leads us to contemplate test statistics based on alternative, less…

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Bayesian Inference for Sequential Treatments Under Latent Sequential Ignorability

潜在序贯可忽略性下序贯处理的贝叶斯推断

Federico Ricciardia* , Alessandra Matteib & Fabrizia Mealliba Department of Statistical Science, University College London, London, UK; b Department of Statistics, Computer Science, Applications, University of Florence, Florence, ItalySupplementary materials for this article are available online. Please go to www.tandfonline.com/r/JASA.CONTACT Federico Ricciardi f.ricciardi@ucl.ac.uk Department of Statistical Science, University College London, London, WC1E 7HB,…

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Statistical Analysis of Functions on Surfaces, With an Application to Medical Imaging

曲面上函数的统计分析及医学影像应用

–In functional data analysis, data are commonly assumed to be smooth functions on a fixed interval of the real line. In this work, we introduce a comprehensive framework for the analysis of functional data, whose domain is a two-dimensional manifold and the domain itself is subject to variability from sample to sample. We formulate a statistical model for such data, here called functions on surfaces, which enables a joint representation of the geometric and functional…

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A Likelihood Ratio Approach to Sequential Change Point Detection for a General Class of Parameters

一般参数序贯变点检测的似然比方法

In this article, we propose a new approach for sequential monitoring of a general class of parameters of a d-dimensional time series, which can be estimated by approximately linear functionals of the empirical distribution function. We consider a closed-end method, which is motivated by the likelihood ratio test principle and compare the new method with two alternative procedures. We also incorporate self-normalization such that estimation of the long-run variance is not…

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Statistical Inference for Covariate-Adaptive Randomization Procedures

协变量自适应随机化程序的统计推断

Covariate-adaptive randomization (CAR) procedures are frequently used in comparative studies to increase the covariate balance across treatment groups. However, because randomization inevitably uses the covariate information when forming balanced treatment groups, the validity of classical statistical methods after such randomization is often unclear. In this article, we derive the theoretical properties of statistical methods based on general CAR under the linear model…

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Simple Local Polynomial Density Estimators

简便的局部多项式密度估计量

This paper introduces an intuitive and easy-to-implement nonparametric density estimator based on local polynomial techniques. The estimator is fully boundary adaptive and automatic, but does not require pre-binning or any other transformation of the data. We study the main asymptotic properties of the estimator, and use these results to provide principled estimation, inference, and bandwidth selection methods. As a substantive application of our results, we develop a novel…

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Nonparametric Estimation of Multivariate Mixtures

多元混合模型的非参数估计

A multivariate mixture model is determined by three elements: the number of components, the mixing proportions, and the component distributions. Assuming that the number of components is given and that each mixture component has independent marginal distributions, we propose a nonparametric method to estimate the component distributions. The basic idea is to convert the estimation of component density functions to a problem of estimating the coordinates of the component…

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Efficiently Inferring the Demographic History of Many Populations With Allele Count Data

利用等位基因计数高效推断多个种群的人口历史

The sample frequency spectrum (SFS), or histogram of allele counts, is an important summary statistic in evolutionary biology, and is often used to infer the history of population size changes, migrations, and other demographic events affecting a set of populations. The expected multipopulation SFS under a given demographic model can be efficiently computed when the populations in the model are related by a tree, scaling to hundreds of populations. Admixture, back-migration,…

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Estimating Optimal Dynamic Treatment Regimes With Survival Outcomes

生存结局下最优动态治疗策略的估计

Gabrielle Simoneaua* , Erica E. M. Moodiea , Jagtar S. Nijjarb, Robert W. Platta & the Scottish Early Rheumatoid Arthritis Inception Cohort Investigatorsa Department of Epidemiology, Biostatistics and Occupational Health, McGill University, Montreal, QC, Canada; b Department of Medicine, University of Cambridge, Cambridge, UKColor versions of one or more of the figures in the article can be found online at www.tandfonline.com/r/JASA.Supplementary materials for this article…

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Studentized Sensitivity Analysis for the Sample Average Treatment Effect in Paired Observational Studies

配对观察性研究中样本平均处理效应的学生化敏感性分析

A fundamental limitation of causal inference in observational studies is that perceived evidence for an effect might instead be explained by factors not accounted for in the primary analysis. Methods for assessing the sensitivity of a study’s conclusions to unmeasured confounding have been established under the assumption that the treatment effect is constant across all individuals. In the potential presence of unmeasured confounding, it has been argued that certain patterns…

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Distribution on Warp Maps for Alignment of Open and Closed Curves

用于开放与闭合曲线对齐的扭曲映射分布

Alignment of curve data is an integral part of their statistical analysis, and can be achieved using model- or optimization-based approaches. The parameter space is usually the set of monotone, continuous warp maps of a domain. Infinite-dimensional nature of the parameter space encourages sampling based approaches, which require a distribution on the set of warp maps. Moreover, the distribution should also enable sampling in the presence of important landmark information on…

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Optimal Sparse Linear Prediction for Block-missing Multi-modality Data Without Imputation

无需插补的块缺失多模态数据最优稀疏线性预测

In modern scientific research, data are often collected from multiple modalities. Since different modalities could provide complementary information, statistical prediction methods using multi-modality data could deliver better prediction performance than using single modality data. However, one special challenge for using multi-modality data is related to block-missing data. In practice, due to dropouts or the high cost of measures, the observations of a certain modality…

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Bayesian Model Search for Nonstationary Periodic Time Series

非平稳周期时间序列的贝叶斯模型搜索

We propose a novel Bayesian methodology for analyzing nonstationary time series that exhibit oscillatory behavior. We approximate the time series using a piecewise oscillatory model with unknown periodicities, where our goal is to estimate the change-points while simultaneously identifying the potentially changing periodicities in the data. Our proposed methodology is based on a trans-dimensional Markov chain Monte Carlo algorithm that simultaneously updates the…

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Simultaneous Covariance Inference for Multimodal Integrative Analysis

多模态整合分析中的协方差同时推断

Multimodal integrative analysis fuses different types of data collected on the same set of experimental subjects. It is becoming a norm in many branches of scientific research, such as multi-omics and multimodal neuroimaging analysis. In this article, we address the problem of simultaneous covariance inference of associations between multiple modalities, which is of a vital interest in multimodal integrative analysis. Recognizing that there are few readily available…

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GAP: A General Framework for Information Pooling in Two-Sample Sparse Inference

GAP:两样本稀疏推断的信息汇聚通用框架

Yin Xiaa, T. Tony Caib & Wenguang Sunc*a Department of Statistics, School of Management, Fudan University, Shanghai, China; b Department of Statistics, The Wharton School, University of Pennsylvania, Philadelphia, PA; c Department of Data Sciences and Operations, University of Southern California, Los Angeles, CAColor versions of one or more of the figures in the article can be found online at www.tandfonline.com/r/JASA.Supplementary materials for this article are available…

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Main Effects and Interactions in Mixed and Incomplete Data Frames

混合与不完整数据表中的主效应和交互作用

A mixed data frame (MDF) is a table collecting categorical, numerical, and count observations. The use of MDF is widespread in statistics and the applications are numerous from abundance data in ecology to recommender systems. In many cases, an MDF exhibits simultaneously main effects, such as row, column, or group effects and interactions, for which a low-rank model has often been suggested. Although the literature on low-rank approximations is very substantial, with few…

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Likelihood Ratio Tests for a Large Directed Acyclic Graph

大型有向无环图的似然比检验

Inference of directional pairwise relations between interacting units in a directed acyclic graph (DAG), such as a regulatory gene network, is common in practice, imposing challenges because of lack of inferential tools. For example, inferring a specific gene pathway of a regulatory gene network is biologically important. Yet, frequentist inference of directionality of connections remains largely unexplored for regulatory models. In this article, we propose constrained…

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