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Improving point and interval estimators of monotone functions by rearrangement

通过重排改进单调函数的点估计与区间估计

Suppose that a target function is monotonic and an available original estimate of this target function is not monotonic. Rearrangements, univariate and multivariate, transform the original estimate to a monotonic estimate that always lies closer in common metrics to the target function. Furthermore, suppose an original confidence interval, which covers the target function with probability at least 1-α, is defined by an upper and lower endpoint functions that are not…

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Empirical Bayes estimation for additive hazards regression models

加性风险回归模型的经验贝叶斯估计

We develop a novel empirical Bayesian framework for the semiparametric additive hazards regression model. The integrated likelihood, obtained by integration over the unknown prior of the nonparametric baseline cumulative hazard, can be maximized using standard statistical software. Unlike the corresponding full Bayes method, our empirical Bayes estimators of regression parameters, survival curves and their corresponding standard errors have easily computed closed-form…

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Induced smoothing for the semiparametric accelerated failure time model: asymptotics and extensions to clustered data

半参数加速失效时间模型的诱导平滑:渐近理论与聚类数据扩展

This paper extends the induced smoothing procedure of Brown & Wang (2006) for the semiparametric accelerated failure time model to the case of clustered failure time data. The resulting procedure permits fast and accurate computation of regression parameter estimates and standard errors using simple and widely available numerical methods, such as the Newton-Raphson algorithm. The regression parameter estimates are shown to be strongly consistent and asymptotically normal; in…

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Pseudo-partial likelihood for proportional hazards models with biased-sampling data

有偏抽样数据下比例风险模型的伪偏似然

We obtain a pseudo-partial likelihood for proportional hazards models with biased-sampling data by embedding the biased-sampling data into left-truncated data. The log pseudo-partial likelihood of the biased-sampling data is the expectation of the log partial likelihood of the left-truncated data conditioned on the observed data. In addition, asymptotic properties of the estimator that maximize the pseudo-partial likelihood are derived. Applications to length-biased data,…

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Pseudo-partial likelihood estimators for the Cox regression model with missing covariates

缺失协变量下 Cox 回归模型的伪偏似然估计

By embedding the missing covariate data into a left-truncated and right-censored survival model, we propose a new class of weighted estimating functions for the Cox regression model with missing covariates. The resulting estimators, called the pseudo-partial likelihood estimators, are shown to be consistent and asymptotically normal. A simulation study demonstrates that, compared with the popular inverse-probability weighted estimators, the new estimators perform better when…

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Objective Bayesian model selection in Gaussian graphical models

高斯图模型中的客观贝叶斯模型选择

This paper presents a default model-selection procedure for Gaussian graphical models that involves two new developments. First, we develop a default version of the hyper-inverse Wishart prior for restricted covariance matrices, called the hyper-inverse Wishart g-prior, and show how it corresponds to the implied fractional prior for selecting a graph using fractional Bayes factors. Second, we apply a class of priors that automatically handles the problem of multiple…

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A group bridge approach for variable selection

用于变量选择的组桥方法

Abstract In multiple regression problems when covariates can be naturally grouped, it is important to carry out feature selection at the group and within-group individual variable levels simultaneously. The existing methods, including the lasso and group lasso, are designed for either variable selection or group selection, but not for both. We propose a group bridge approach that is capable of simultaneous selection at both the group and within-group individual variable…

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Saddlepoint approximation for mixture models

混合模型的鞍点近似

Two-component mixture distributions with one component a point mass and the other a continuous density may be used as priors for Bayesian inference when sparse representation of an underlying signal is required. We show how saddlepoint approximation in such models can yield highly accurate quantiles for posterior distributions, and illustrate this numerically, using wavelet regression with point mass/Laplace and point mass/normal prior distributions.

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Nonparametric Bayes local partition models for random effects

随机效应的非参数贝叶斯局部分割模型

This paper focuses on the problem of choosing a prior for an unknown random effects distribution within a Bayesian hierarchical model. The goal is to obtain a sparse representation by allowing a combination of global and local borrowing of information. A local partition process prior is proposed, which induces dependent local clustering. Subjects can be clustered together for a subset of their parameters, and one learns about similarities between subjects increasingly as…

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Hierarchically penalized Cox regression with grouped variables

具有分组变量的层级惩罚 Cox 回归

In many biological and other scientific applications, predictors are often naturally grouped. For example, in biological applications, assayed genes or proteins are grouped by biological roles or biological pathways. When studying the dependence of survival outcome on these grouped predictors, it is desirable to select variables at both the group level and the within-group level. In this article, we develop a new method to address the group variable selection problem in the…

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A generalized Dantzig selector with shrinkage tuning

带收缩调节的广义 Dantzig 选择器

The Dantzig selector performs variable selection and model fitting in linear regression. It uses an L1 penalty to shrink the regression coefficients towards zero, in a similar fashion to the lasso. While both the lasso and Dantzig selector potentially do a good job of selecting the correct variables, they tend to overshrink the final coefficients. This results in an unfortunate trade-off. One can either select a high shrinkage tuning parameter that produces an accurate model…

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Nonparametric additive regression for repeatedly measured data

重复测量数据的非参数加性回归

We develop an easily computed smooth backfitting algorithm for additive model fitting in repeated measures problems. Our methodology easily copes with various settings, such as when some covariates are the same over repeated response measurements. We allow for a working covariance matrix for the regression errors, showing that our method is most efficient when the correct covariance matrix is used. The component functions achieve the known asymptotic variance lower bound for…

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Double block bootstrap confidence intervals for dependent data

依赖数据的双重分块自助法置信区间

The block bootstrap confidence interval for dependent data can outperform the conventional normal approximation only with nontrivial studentization which, in the case of complicated statistics, calls for specialist treatment and often results in unstable endpoints. We propose two double block bootstrap approaches for improving the accuracy of the block bootstrap confidence interval under very general conditions. The first approach calibrates the nominal coverage level and…

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Gamma frailty transformation models for multivariate survival times

多元生存时间的 Gamma 脆弱性变换模型

We propose a class of transformation models for multivariate failure times. The class of transformation models generalize the usual gamma frailty model and yields a marginally linear transformation model for each failure time. Nonparametric maximum likelihood estimation is used for inference. The maximum likelihood estimators for the regression coefficients are shown to be consistent and asymptotically normal, and their asymptotic variances attain the semiparametric…

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Non-finite Fisher information and homogeneity: an EM approach

非有限 Fisher 信息与同质性检验:一种 EM 方法

Even simple examples of finite mixture models can fail to fulfil the regularity conditions that are routinely assumed in standard parametric inference problems. Many methods have been investigated for testing for homogeneity in finite mixture models, for example, but all rely on regularity conditions including the finiteness of the Fisher information and the space of the mixing parameter being a compact subset of some Euclidean space. Very simple examples where such…

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Marginal analysis of panel counts through estimating functions

基于估计函数的面板计数边际分析

We develop nonparametric estimation procedures for the marginal mean function of a counting process based on periodic observations, using two types of self-consistent estimating equations. The first is derived from the likelihood studied in Wellner & Zhang (2000), assuming a Poisson counting process, and gives a nondecreasing estimator, which is the same as the nonparametric maximum likelihood estimator of Wellner & Zhang and thus is consistent without the Poisson…

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Covariate-adjusted generalized linear models

协变量调整的广义线性模型

We propose covariate adjustment methodology for a situation where one wishes to study the dependence of a generalized response on predictors while both predictors and response are distorted by an observable covariate. The distorting covariate is thought of as a size measurement that affects predictors in a multiplicative fashion. The generalized response is modelled by means of a random threshold, where the subject-specific thresholds are affected by a multiplicative factor…

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Optimal testing of multiple hypotheses with common effect direction

效应方向相同的多重假设最优检验

We present a theoretical basis for testing related endpoints. Typically, it is known how to construct tests of the individual hypotheses, but not how to combine them into a multiple test procedure that controls the familywise error rate. Using the closure method, we emphasize the role of consonant procedures, from an interpretive as well as a theoretical viewpoint. Surprisingly, even if each intersection test has an optimality property, the overall procedure obtained by…

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Generalized method of moments estimation for linear regression with clustered failure time data

聚类失效时间数据线性回归的广义矩估计

We propose a generalized method of moments approach to the accelerated failure time model with correlated survival data. We study the semiparametric rank estimator using martingale-based moments. We circumvent direct estimation of correlation parameters by concatenating the moments and minimizing a quadratic objective function. We establish the consistency and asymptotic normality of the parameter estimators, and derive the limiting distribution of the objective function. We…

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Jackknife estimation of mean squared error of small area predictors in nonlinear mixed models

非线性混合模型中小区域预测均方误差的刀切估计

Empirical Bayes predictors of small area parameters of interest are often obtained under a linear mixed model for continuous response data or a generalized linear mixed model for binary responses or count data. However, estimation of the unconditional mean squared error of prediction is complicated, particularly for a nonlinear mixed model. Jiang et al. (2002) proposed a jackknife method for estimating the unconditional mean squared error and showed that the resulting…

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Scale adjustments for classifiers in high-dimensional, low sample size settings

高维小样本分类器的尺度调整

Distance-based classifiers are generally considered to be effective at discriminating between populations that differ in location. Indeed, nearest-neighbour methods and the support vector machine are frequently used in very high-dimensional problems involving gene expression data, where it is believed that elevated levels of expression convey much of the information for classification. However, one problem inherent to distance-based classifiers is that scale differences can…

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Adjusting for covariate effects on classification accuracy using the covariate-adjusted receiver operating characteristic curve

利用协变量调整 ROC 曲线评估分类准确性

Recent scientific and technological innovations have produced an abundance of potential markers that are being investigated for their use in disease screening and diagnosis. In evaluating these markers, it is often necessary to account for covariates associated with the marker of interest. Covariates may include subject characteristics, expertise of the test operator, test procedures or aspects of specimen handling. In this paper, we propose the covariate-adjusted receiver…

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Model checking in regression via dimension reduction

通过降维进行回归模型检验

Lack-of-fit checking for parametric and semiparametric models is essential in reducing misspecification. The efficiency of most existing model-checking methods drops rapidly as the dimension of the covariates increases. We propose to check a model by projecting the fitted residuals along a direction that adapts to the systematic departure of the residuals from the desired pattern. Consistency of the method is proved for parametric and semiparametric regression models. A…

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