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Heterogeneous individual risk modelling of recurrent events

重复事件的异质性个体风险建模

Summary Progression of chronic disease is often manifested by repeated occurrences of disease-related events over time. Delineating the heterogeneity in the risk of such recurrent events can provide valuable scientific insight for guiding customized disease management. We propose a new sensible measure of individual risk of recurrent events and present a dynamic modelling framework thereof, which accounts for both observed covariates and unobservable frailty. The proposed…

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High-dimensional empirical likelihood inference

高维经验似然推断

Summary High-dimensional statistical inference with general estimating equations is challenging and remains little explored. We study two problems in the area: confidence set estimation for multiple components of the model parameters, and model specifications tests. First, we propose to construct a new set of estimating equations such that the impact from estimating the high-dimensional nuisance parameters becomes asymptotically negligible. The new construction enables us to…

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In search of lost mixing time: adaptive Markov chain Monte Carlo schemes for Bayesian variable selection with very large p

寻找失落的混合时间:超高维贝叶斯变量选择的自适应 MCMC

Summary The availability of datasets with large numbers of variables is rapidly increasing. The effective application of Bayesian variable selection methods for regression with these datasets has proved difficult since available Markov chain Monte Carlo methods do not perform well in typical problem sizes of interest. We propose new adaptive Markov chain Monte Carlo algorithms to address this shortcoming. The adaptive design of these algorithms exploits the observation that…

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Event history analysis of dynamic networks

动态网络的事件史分析

Summary Statistical analysis on networks has received growing attention due to demand from various emerging applications. In dynamic networks, one of the key interests is to model the event history of time-stamped interactions among nodes. We model dynamic directed networks via multivariate counting processes. A pseudo partial likelihood approach is exploited to capture the network dependence structure. Asymptotic results are established. Numerical experiments are performed…

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Modelling temporal biomarkers with semiparametric nonlinear dynamical systems

用半参数非线性动力系统建模时变生物标志物

Summary Dynamical systems based on differential equations are useful for modelling the temporal evolution of biomarkers. Such systems can characterize the temporal patterns of biomarkers and inform the detection of interactions between biomarkers. Existing statistical methods for dynamical systems deal mostly with single time-course data based on a linear model or generalized additive model. Hence, they cannot adequately capture the complex interactions between biomarkers;…

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Jump or kink: on super-efficiency in segmented linear regression breakpoint estimation

跳跃还是折点:分段线性回归断点估计的超效率

Summary We consider the problem of segmented linear regression with a single breakpoint, with the focus on estimating the location of the breakpoint. If $n$ is the sample size, we show that the global minimax convergence rate for this problem in terms of the mean absolute error is $O(n^{-1/3})$. On the other hand, we demonstrate the construction of a super-efficient estimator that achieves the pointwise convergence rate of either $O(n^{-1})$ or $O(n^{-1/2})$ for every fixed…

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Characterization of parameters with a mixed bias property

具有混合偏差性质的参数刻画

Summary We study a class of parameters with the so-called mixed bias property. For parameters with this property, the bias of the semiparametric efficient one-step estimator is equal to the mean of the product of the estimation errors of two nuisance functions. In nonparametric models, parameters with the mixed bias property admit so-called rate doubly robust estimators, i.e., estimators that are consistent and asymptotically normal when one succeeds in estimating both…

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An asymptotic and empirical smoothing parameters selection method for smoothing spline ANOVA models in large samples

大样本平滑样条 ANOVA 模型的渐近与经验平滑参数选择

Summary Large samples are generated routinely from various sources. Classic statistical models, such as smoothing spline ANOVA models, are not well equipped to analyse such large samples because of high computational costs. In particular, the daunting computational cost of selecting smoothing parameters renders smoothing spline ANOVA models impractical. In this article, we develop an asympirical, i.e., asymptotic and empirical, smoothing parameters selection method for…

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Testing for measurement error in survey data analysis using paradata

利用调查过程数据检验测量误差偏差

Summary Paradata refers to survey variables which are not of direct interest themselves, but are related to the quality of data on survey variables which are of interest. We focus on a categorical paradata variable, which reflects the presence of measurement error in a variable of interest. We propose a quasi-score test of the hypothesis of no measurement error bias in the estimation of regression coefficients under models for paradata. We also propose a regression-based…

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Jeffreys-prior penalty, finiteness and shrinkage in binomial-response generalized linear models

二项响应广义线性模型中的 Jeffreys 先验惩罚、有限性与收缩

Summary Penalization of the likelihood by Jeffreys’ invariant prior, or a positive power thereof, is shown to produce finite-valued maximum penalized likelihood estimates in a broad class of binomial generalized linear models. The class of models includes logistic regression, where the Jeffreys-prior penalty is known additionally to reduce the asymptotic bias of the maximum likelihood estimator, and models with other commonly used link functions, such as probit and log-log.…

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A likelihood analysis of quantile-matching transformations

分位数匹配变换的似然分析

Summary Quantile matching is a strictly monotone transformation that sends the observed response values to the quantiles of a given target distribution. A profile likelihood-based criterion is developed for comparing one target distribution with another in a linear-model setting.

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High-quantile regression for tail-dependent time series

尾部依赖时间序列的高分位数回归

Summary Quantile regression is a popular and powerful method for studying the effect of regressors on quantiles of a response distribution. However, existing results on quantile regression were mainly developed for cases in which the quantile level is fixed, and the data are often assumed to be independent. Motivated by recent applications, we consider the situation where (i) the quantile level is not fixed and can grow with the sample size to capture the tail phenomena, and…

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Optimal subsampling for quantile regression in big data

大数据分位数回归的最优子抽样

Summary We investigate optimal subsampling for quantile regression. We derive the asymptotic distribution of a general subsampling estimator and then derive two versions of optimal subsampling probabilities. One version minimizes the trace of the asymptotic variance-covariance matrix for a linearly transformed parameter estimator and the other minimizes that of the original parameter estimator. The former does not depend on the densities of the responses given covariates and…

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Functional regression on the manifold with contamination

含污染观测的流形上函数型回归

Summary We propose a new method for functional nonparametric regression with a predictor that resides on a finite-dimensional manifold, but is observable only in an infinite-dimensional space. Contamination of the predictor due to discrete or noisy measurements is also accounted for. By using functional local linear manifold smoothing, the proposed estimator enjoys a polynomial rate of convergence that adapts to the intrinsic manifold dimension and the contamination level.…

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Hypothesis testing for phylogenetic composition: a minimum-cost flow perspective

系统发育组成的假设检验:最小费用流视角

Summary Quantitative comparison of microbial composition from different populations is a fundamental task in various microbiome studies. We consider two-sample testing for microbial compositional data by leveraging phylogenetic information. Motivated by existing phylogenetic distances, we take a minimum-cost flow perspective to study such testing problems. We first show that multivariate analysis of variance with permutation using phylogenetic distances, one of the most…

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Large-sample asymptotics of the pseudo-marginal method

伪边际方法的大样本渐近理论

Summary The pseudo-marginal algorithm is a variant of the Metropolis–Hastings algorithm which samples asymptotically from a probability distribution when it is only possible to estimate unbiasedly an unnormalized version of its density. Practically, one has to trade off the computational resources used to obtain this estimator against the asymptotic variances of the ergodic averages obtained by the pseudo-marginal algorithm. Recent works on optimizing this trade-off rely on…

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The asymptotic distribution of modularity in weighted signed networks

加权有符号网络中模块度的渐近分布

Summary Modularity is a popular metric for quantifying the degree of community structure within a network. The distribution of the largest eigenvalue of a network’s edge weight or adjacency matrix is well studied and is frequently used as a substitute for modularity when performing statistical inference. However, we show that the largest eigenvalue and modularity are asymptotically uncorrelated, which suggests the need for inference directly on modularity itself when the…

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Matrix-variate logistic regression with measurement error

含测量误差的矩阵型逻辑回归

Summary Measurement error in covariates has been extensively studied in many conventional regression settings where covariate information is typically expressed in a vector form. However, there has been little work on error-prone matrix-variate data, which commonly arise from studies with imaging, spatial-temporal structures, etc. We consider analysis of error-contaminated matrix-variate data. We particularly focus on matrix-variate logistic measurement error models. We…

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On testing marginal versus conditional independence

边际独立与条件独立的检验

Summary We consider testing marginal independence versus conditional independence in a trivariate Gaussian setting. The two models are nonnested, and their intersection is a union of two marginal independences. We consider two sequences of such models, one from each type of independence, that are closest to each other in the Kullback–Leibler sense as they approach the intersection. They become indistinguishable if the signal strength, as measured by the product of two…

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Extended stochastic gradient Markov chain Monte Carlo for large-scale Bayesian variable selection

用于大规模贝叶斯变量选择的扩展随机梯度 MCMC

Summary Stochastic gradient Markov chain Monte Carlo algorithms have received much attention in Bayesian computing for big data problems, but they are only applicable to a small class of problems for which the parameter space has a fixed dimension and the log-posterior density is differentiable with respect to the parameters. This paper proposes an extended stochastic gradient Markov chain Monte Carlo algorithm which, by introducing appropriate latent variables, can be…

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Optimal Bayesian estimation for random dot product graphs

随机点积图潜在位置的最优贝叶斯估计

Summary We propose and prove the optimality of a Bayesian approach for estimating the latent positions in random dot product graphs, which we call posterior spectral embedding. Unlike classical spectral-based adjacency, or Laplacian spectral embedding, posterior spectral embedding is a fully likelihood-based graph estimation method that takes advantage of the Bernoulli likelihood information of the observed adjacency matrix. We develop a minimax lower bound for estimating…

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Envelopes in multivariate regression models with nonlinearity and heteroscedasticity

非线性与异方差多元回归模型中的包络方法

Summary Envelopes have been proposed in recent years as a nascent methodology for sufficient dimension reduction and efficient parameter estimation in multivariate linear models. We extend the classical definition of envelopes in Cook et al. (2010) to incorporate a nonlinear conditional mean function and a heteroscedastic error. Given any two random vectors ${X}\in\mathbb{R}^{p}$ and ${Y}\in\mathbb{R}^{r}$, we propose two new model-free envelopes, called the martingale…

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Efficient posterior sampling for high-dimensional imbalanced logistic regression

高维不平衡逻辑回归的高效后验抽样

Summary Classification with high-dimensional data is of widespread interest and often involves dealing with imbalanced data. Bayesian classification approaches are hampered by the fact that current Markov chain Monte Carlo algorithms for posterior computation become inefficient as the number $p$ of predictors or the number $n$ of subjects to classify gets large, because of the increasing computational time per step and worsening mixing rates. One strategy is to employ a…

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General regression model for the subdistribution of a competing risk under left-truncation and right-censoring

左截断与右删失下竞争风险子分布的一般回归模型

Summary Left-truncation poses extra challenges for the analysis of complex time-to-event data. We propose a general semiparametric regression model for left-truncated and right-censored competing risks data that is based on a novel weighted conditional likelihood function. Targeting the subdistribution hazard, our parameter estimates are directly interpretable with regard to the cumulative incidence function. We compare different weights from recent literature and develop a…

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