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Analytical p-value calculation for the higher criticism test in finite-d problems

有限维 higher criticism 检验的解析 p 值计算

The higher criticism test is effective for testing a joint null hypothesis against a sparse alternative, e.g., for testing the effect of a gene or genetic pathway that consists of d genetic markers. Accurate p-value calculations for the higher criticism test based on the asymptotic distribution require a very large d, which is not the case for the number of genetic variants in a gene or a pathway. In this paper we propose an analytical method for accurately computing the…

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Time-dependent cross ratio estimation for bivariate failure times

二元失效时间的时变交叉比估计

In the analysis of bivariate correlated failure time data, it is important to measure the strength of association among the correlated failure times. One commonly used measure is the cross ratio. Motivated by Cox's partial likelihood idea, we propose a novel parametric cross ratio estimator that is a flexible continuous function of both components of the bivariate survival times. We show that the proposed estimator is consistent and asymptotically normal. Its finite sample…

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The effect of correlation in false discovery rate estimation

相关性对错误发现率估计的影响

The objective of this paper is to quantify the effect of correlation in false discovery rate analysis. Specifically, we derive approximations for the mean, variance, distribution and quantiles of the standard false discovery rate estimator for arbitrarily correlated data. This is achieved using a negative binomial model for the number of false discoveries, where the parameters are found empirically from the data. We show that correlation may increase the bias and variance of…

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Semiparametric maximum likelihood estimation in normal transformation models for bivariate survival data

二元生存数据正态变换模型的半参数极大似然估计

We consider a class of semiparametric normal transformation models for right censored bivariate failure times. Nonparametric hazard rate models are transformed to a standard normal model and a joint normal distribution is assumed for the bivariate vector of transformed variates. A semiparametric maximum likelihood estimation procedure is developed for estimating the marginal survival distribution and the pairwise correlation parameters. This produces an efficient estimator…

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Nonparametric regression using local kernel estimating equations for correlated failure time data

利用局部核估计方程分析相关失效时间数据的非参数回归

We study nonparametric regression for correlated failure time data. Kernel estimating equations are used to estimate nonparametric covariate effects. Independent and weighted-kernel estimating equations are studied. The derivative of the nonparametric function is first estimated and the nonparametric function is then estimated by integrating the derivative estimator. We show that the nonparametric kernel estimator is consistent for any arbitrary working correlation matrix…

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Equivalent kernels of smoothing splines in nonparametric regression for clustered/longitudinal data

聚类与纵向数据非参数回归中平滑样条的等价核

For independent data, it is well known that kernel methods and spline methods are essentially asymptotically equivalent (Silverman, 1984). However, recent work of Welsh et al. (2002) shows that the same is not true for clustered/longitudinal data. Splines and conventional kernels are different in localness and ability to account for the within‐cluster correlation. We show that a smoothing spline estimator is asymptotically equivalent to a recently proposed seemingly…

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Semiparametric regression for clustered data

聚类数据的半参数回归

We consider estimation in a semiparametric partially generalised linear model for clustered data using estimating equations. A marginal model is assumed where the mean of the outcome variable depends on some covariates parametrically and a cluster‐level covariate nonparametrically. A profile‐kernel method allowing for working correlation matrices is developed. We show that the nonparametric part of the model can be estimated using standard nonparametric methods, including…

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Inference in Generalized Additive Mixed Models by Using Smoothing Splines

利用平滑样条进行广义可加混合模型推断

Summary Generalized additive mixed models are proposed for overdispersed and correlated data, which arise frequently in studies involving clustered, hierarchical and spatial designs. This class of models allows flexible functional dependence of an outcome variable on covariates by using nonparametric regression, while accounting for correlation between observations by using random effects. We estimate nonparametric functions by using smoothing splines and jointly estimate…

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Bias correction in generalised linear mixed models with a single component of dispersion

单一离散分量广义线性混合模型的偏差校正

General expressions are derived for the asymptotic biases in three approximate estimators of regression coefficients and variance component, for small values of the variance component, in generalised linear mixed models with canonical link function and a single source of extraneous variation. The estimators involve first and second order Laplace expansions of the integrated likelihood and a related procedure known as penalised quasi-likelihood. Numerical studies of a series…

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