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A more robust approach to multivariable Mendelian randomization

更稳健的多变量孟德尔随机化方法

Summary Multivariable Mendelian randomization uses genetic variants as instrumental variables to infer the direct effects of multiple exposures on an outcome. However, unlike univariable Mendelian randomization, multivariable Mendelian randomization often faces greater challenges with many weak instruments, which can lead to bias not necessarily toward zero and inflation of Type-I errors. In this work, we introduce a new asymptotic regime that allows exposures to have…

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A general form of covariate adjustment in clinical trials under covariate-adaptive randomization

协变量自适应随机化临床试验中的一般协变量调整

Abstract In randomized clinical trials, adjusting for baseline covariates can improve credibility and efficiency for demonstrating and quantifying treatment effects. This article studies the augmented inverse propensity weighted estimator, which is a general form of covariate adjustment that uses linear, generalized linear and nonparametric or machine learning models for the conditional mean of the response given covariates. Under covariate-adaptive randomization, we…

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A focusing framework for testing bi-directional causal effects in Mendelian randomization

孟德尔随机化中检验双向因果效应的聚焦框架

Abstract Mendelian randomization (MR) is a powerful method that uses genetic variants as instrumental variables to infer the causal effect of a modifiable exposure on an outcome. We study inference for bi-directional causal relationships and causal directions with possibly pleiotropic genetic variants. We show that assumptions for common MR methods are often impossible or too stringent given the potential bi-directional relationships. We propose a new focusing framework for…

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Combining Broad and Narrow Case Definitions in Matched Case-Control Studies: Firearms in the Home and Suicide Risk

匹配病例对照研究中结合宽窄病例定义:家中枪支与自杀风险

Does having firearms in the home increase suicide risk? To test this hypothesis, a matched case-control study can be performed, in which suicide case subjects are compared to living controls who are similar in observed covariates in terms of their retrospective exposure to firearms at home. In this application, cases can be defined using a broad case definition (suicide) or a narrow case definition (suicide occurred at home). The broad case definition offers a larger number…

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GENIUS-MAWII: for robust Mendelian randomization with many weak invalid instruments

GENIUS-MAWII:应对大量弱且无效工具变量的稳健孟德尔随机化

Abstract Mendelian randomization (MR) addresses causal questions using genetic variants as instrumental variables. We propose a new MR method, G-Estimation under No Interaction with Unmeasured Selection (GENIUS)-MAny Weak Invalid IV, which simultaneously addresses the 2 salient challenges in MR: many weak instruments and widespread horizontal pleiotropy. Similar to MR-GENIUS, we use heteroscedasticity of the exposure to identify the treatment effect. We derive influence…

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A Negative Correlation Strategy for Bracketing in Difference-in-Differences

双重差分中构造效应界限的负相关策略

The method of difference-in-differences (DID) is widely used to study the causal effect of policy interventions in observational studies. DID employs a before and after comparison of the treated and control units to remove bias due to time-invariant unmeasured confounders under the parallel trends assumption. Estimates from DID, however, will be biased if the outcomes for the treated and control units evolve differently in the absence of treatment, namely if the parallel…

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Covariate-adjusted log-rank test: guaranteed efficiency gain and universal applicability

协变量调整的对数秩检验:效率增益与广泛适用性

Summary Nonparametric covariate adjustment is considered for log-rank-type tests of the treatment effect with right-censored time-to-event data from clinical trials applying covariate-adaptive randomization. Our proposed covariate-adjusted log-rank test has a simple explicit formula and a guaranteed efficiency gain over the unadjusted test. We also show that our proposed test achieves universal applicability in the sense that the same formula of test can be universally…

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Fundamentals of Causal Inference: With R

因果推断基础:使用R

Fundamentals of Causal Inference: With R, by Babette Brumback provides an excellent introduction to causal inference methods and their implementations using R. The book is well-written, with many t...

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Toward Better Practice of Covariate Adjustment in Analyzing Randomized Clinical Trials

随机临床试验中协变量调整的实践改进

In randomized clinical trials, adjustments for baseline covariates at both design and analysis stages are highly encouraged by regulatory agencies. A recent trend is to use a model-assisted approach for covariate adjustment to gain credibility and efficiency while producing asymptotically valid inference even when the model is incorrect. In this article we present three considerations for better practice when model-assisted inference is applied to adjust for covariates under…

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Inference on the average treatment effect under minimization and other covariate-adaptive randomization methods

最小化及其他协变量自适应随机化下的平均处理效应推断

Summary Covariate-adaptive randomization schemes such as minimization and stratified permuted blocks are often applied in clinical trials to balance treatment assignments across prognostic factors. The existing theory for inference after covariate-adaptive randomization is mostly limited to situations where a correct model between the response and covariates can be specified or the randomization method has well-understood properties. Based on stratification with covariate…

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Debiased inverse-variance weighted estimator in two-sample summary-data Mendelian randomization

两样本汇总数据孟德尔随机化中的去偏逆方差加权估计

Mendelian randomization (MR) has become a popular approach to study the effect of a modifiable exposure on an outcome by using genetic variants as instrumental variables. A challenge in MR is that each genetic variant explains a relatively small proportion of variance in the exposure and there are many such variants, a setting known as many weak instruments. To this end, we provide a theoretical characterization of the statistical properties of two popular estimators in MR:…

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Robust Tests for Treatment Effect in Survival Analysis under Covariate-Adaptive Randomization

协变量自适应随机化下生存分析中治疗效应的稳健检验

Summary Covariate-adaptive randomization is popular in clinical trials with sequentially arrived patients for balancing treatment assignments across prognostic factors that may have influence on the response. However, existing theory on tests for the treatment effect under covariate-adaptive randomization is limited to tests under linear or generalized linear models, although the covariate-adaptive randomization method has been used in survival analysis for a long time.…

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