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稀疏高阶偏最小二乘：变量选择、降维与张量去噪AI 解读

Abstract Motivated by the challenge of estimating effects of DNA methylation on 3D genomic contacts captured by multimodal single-cell Hi-C data, we consider the tensor-response partial least squares model with $ \mathcal{Y}=\mathcal{B}\times_{1}X+\mathcal{F} $, where the correlated high-dimensional predictors $ X\in\mathbb{R}^{n\times d_{1}} $ and the sparse and noisy high-dimensional responses $ \mathcal{Y}\in\mathbb{R}^{n\times\prod_{m}d_{m}} $ are observed, the low-rank…

利用Muscle联合张量建模单细胞三维基因组与表观遗传数据AI 解读

Emerging single cell technologies that simultaneously capture long-range interactions of genomic loci together with their DNA methylation levels are advancing our understanding of three-dimensional genome structure and its interplay with the epigenome at the single cell level. While methods to analyze data from single cell high throughput chromatin conformation capture (scHi-C) experiments are maturing, methods that can jointly analyze multiple single cell modalities with…

同时降维与变量选择的稀疏偏最小二乘回归AI 解读

Summary Partial least squares regression has been an alternative to ordinary least squares for handling multicollinearity in several areas of scientific research since the 1960s. It has recently gained much attention in the analysis of high dimensional genomic data. We show that known asymptotic consistency of the partial least squares estimator for a univariate response does not hold with the very large p and small n paradigm. We derive a similar result for a multivariate…

时变协变量与依赖删失下的重复事件分析AI 解读

Summary Recurrent events models have had considerable attention recently. The majority of approaches show the consistency of parameter estimates under the assumption that censoring is independent of the recurrent events process of interest conditional on the covariates that are included in the model. We provide an overview of available recurrent events analysis methods and present an inverse probability of censoring weighted estimator for the regression parameters in the…