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Inference on the Proportion of Variance Explained in Principal Component Analysis

主成分分析中方差解释比例的统计推断

Principal component analysis (PCA) is a longstanding approach for dimension reduction. It rests upon the assumption that the underlying signal has low rank, and thus can be well-summarized using a small number of dimensions. The output of PCA is typically represented using a scree plot, which displays the proportion of variance explained (PVE) by each principal component. While the PVE is extensively reported in routine analyses, to the best of our knowledge the notion of…

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Prediction sets for high-dimensional mixture of experts models

高维混合专家模型的预测集

Abstract Large datasets make it possible to build predictive models that can capture heterogenous relationships between the response variable and features. The mixture of high-dimensional linear experts model posits that observations come from a mixture of high-dimensional linear regression models, where the mixture weights are themselves feature-dependent. In this article, we show how to construct valid prediction sets for an ℓ1-penalized mixture of experts model in the…

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Inferring Independent Sets of Gaussian Variables after Thresholding Correlations

相关阈值筛选后高斯变量集合的独立性推断

We consider testing whether a set of Gaussian variables, selected from the data, is independent of the remaining variables. This set is selected via a very simple approach: these are the variables for which the correlation with all other variables falls below some threshold. Unlike other settings in selective inference, failure to account for the selection step leads to excessively conservative (as opposed to anti-conservative) results. We propose a new test that conditions…

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Selective Inference for Hierarchical Clustering

层次聚类的选择后推断

Classical tests for a difference in means control the Type I error rate when the groups are defined a priori. However, when the groups are instead defined via clustering, then applying a classical test yields an extremely inflated Type I error rate. Notably, this problem persists even if two separate and independent datasets are used to define the groups and to test for a difference in their means. To address this problem, in this article, we propose a selective inference…

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Sparse Identification and Estimation of Large-Scale Vector AutoRegressive Moving Averages

大规模向量自回归移动平均模型的稀疏识别与估计

The Vector AutoRegressive Moving Average (VARMA) model is fundamental to the theory of multivariate time series; however, identifiability issues have led practitioners to abandon it in favor of the simpler but more restrictive Vector AutoRegressive (VAR) model. We narrow this gap with a new optimization-based approach to VARMA identification built upon the principle of parsimony. Among all equivalent data-generating models, we use convex optimization to seek the…

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Rare Feature Selection in High Dimensions

高维稀有特征选择

It is common in modern prediction problems for many predictor variables to be counts of rarely occurring events. This leads to design matrices in which many columns are highly sparse. The challenge posed by such “rare features” has received little attention despite its prevalence in diverse areas, ranging from natural language processing (e.g., rare words) to biology (e.g., rare species). We show, both theoretically and empirically, that not explicitly accounting for the…

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Estimating the error variance in a high-dimensional linear model

高维线性模型中的误差方差估计

Summary The lasso has been studied extensively as a tool for estimating the coefficient vector in the high-dimensional linear model; however, considerably less is known about estimating the error variance in this context. In this paper, we propose the natural lasso estimator for the error variance, which maximizes a penalized likelihood objective. A key aspect of the natural lasso is that the likelihood is expressed in terms of the natural parameterization of the…

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Graph-Guided Banding of the Covariance Matrix

图引导的协方差矩阵带状估计

Regularization has become a primary tool for developing reliable estimators of the covariance matrix in high-dimensional settings. To curb the curse of dimensionality, numerous methods assume that the population covariance (or inverse covariance) matrix is sparse, while making no particular structural assumptions on the desired pattern of sparsity. A highly-related, yet complementary, literature studies the specific setting in which the measured variables have a known…

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Convex Banding of the Covariance Matrix

协方差矩阵的凸带状化估计

We introduce a new sparse estimator of the covariance matrix for high-dimensional models in which the variables have a known ordering. Our estimator, which is the solution to a convex optimization problem, is equivalently expressed as an estimator which tapers the sample covariance matrix by a Toeplitz, sparsely-banded, data-adaptive matrix. As a result of this adaptivity, the convex banding estimator enjoys theoretical optimality properties not attained by previous banding…

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A lasso for hierarchical interactions

满足交互项层级约束的 lasso

We add a set of convex constraints to the lasso to produce sparse interaction models that honor the hierarchy restriction that an interaction only be included in a model if one or both variables are marginally important. We give a precise characterization of the effect of this hierarchy constraint, prove that hierarchy holds with probability one and derive an unbiased estimate for the degrees of freedom of our estimator. A bound on this estimate reveals the amount of fitting…

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Strong Rules for Discarding Predictors in Lasso-Type Problems

Lasso类问题中剔除预测变量的强规则

Summary We consider rules for discarding predictors in lasso regression and related problems, for computational efficiency. El Ghaoui and his colleagues have proposed ‘SAFE’ rules, based on univariate inner products between each predictor and the outcome, which guarantee that a coefficient will be 0 in the solution vector. This provides a reduction in the number of variables that need to be entered into the optimization. We propose strong rules that are very simple and yet…

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Hierarchical Clustering With Prototypes via Minimax Linkage

通过极小极大连接实现带原型的层次聚类

Agglomerative hierarchical clustering is a popular class of methods for understanding the structure of a dataset. The nature of the clustering depends on the choice of linkage—that is, on how one measures the distance between clusters. In this article we investigate minimax linkage, a recently introduced but little-studied linkage. Minimax linkage is unique in naturally associating a prototype chosen from the original dataset with every interior node of the dendrogram. These…

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