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Modelling positive and unlabelled data with a generalized additive density ratio model

用广义加性密度比模型处理正例与未标记数据

Abstract This paper focuses on learning from positive and unlabelled (PU) data, where only some positives are labelled and the rest are mixed with negatives. Classical exponential tilting models guarantee identifiability by imposing a linear structure, but they can be severely misspecified when the true relationships are nonlinear. We propose a generalized additive density-ratio framework that retains identifiability while allowing nonlinear and feature-specific effects. The…

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Checking the Cox Proportional Hazards Model with Interval-Censored Data

区间删失数据下 Cox 比例风险模型的检验

This article presents a general framework for checking the adequacy of the Cox proportional hazards model with interval-censored data, which arise when the event of interest is known only to occur over a random time interval. Specifically, we construct certain stochastic processes that are informative about various aspects of the model, that is, the functional forms of covariates, the exponential link function and the proportional hazards assumption. We establish their weak…

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Semiparametric Regression Analysis of Interval-Censored Multi-State Data with An Absorbing State

含吸收态的区间删失多状态数据半参数回归分析

In studies of chronic diseases, the health status of a subject can often be characterized by a finite number of transient disease states and an absorbing state, such as death. The times of transitions among the transient states are ascertained through periodic examinations and thus interval-censored. The time of reaching the absorbing state is known or right-censored, with the transient state at the previous instant being unobserved. In this paper, we provide a general…

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A robust covariate-balancing method for learning optimal individualized treatment regimes

学习最优个体化治疗规则的稳健协变量平衡方法

Abstract One of the most important problems in precision medicine is to find the optimal individualized treatment rule, which is designed to recommend treatment decisions and maximize overall clinical benefit to patients based on their individual characteristics. Typically, the expected clinical outcome is required to be estimated first, for which an outcome regression model or a propensity score model usually needs to be assumed with most existing statistical methods.…

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Efficient Nonparametric Estimation of Stochastic Policy Effects with Clustered Interference

聚类干扰下随机政策效应的高效非参数估计

Interference occurs when a unit's treatment (or exposure) affects another unit's outcome. In some settings, units may be grouped into clusters such that it is reasonable to assume that interference, if present, only occurs between individuals in the same cluster, i.e., there is clustered interference. Various causal estimands have been proposed to quantify treatment effects under clustered interference from observational data, but these estimands either entail treatment…

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Controlling Cumulative Adverse Risk in Learning Optimal Dynamic Treatment Regimens

学习最优动态治疗方案时控制累积不良风险

Dynamic treatment regimen (DTR) is one of the most important tools to tailor treatment in personalized medicine. For many diseases such as cancer and type 2 diabetes mellitus (T2D), more aggressive treatments can lead to a higher efficacy but may also increase risk. However, few methods for estimating DTRs can take into account both cumulative benefit and risk. In this work, we propose a general statistical learning framework to learn optimal DTRs that maximize the reward…

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Maximum likelihood estimation for semiparametric regression models with interval-censored multistate data

区间删失多状态数据半参数回归模型的最大似然估计

Summary Interval-censored multistate data arise in many studies of chronic diseases, where the health status of a subject can be characterized by a finite number of disease states and the transition between any two states is only known to occur over a broad time interval. We relate potentially time-dependent covariates to multistate processes through semiparametric proportional intensity models with random effects. We study nonparametric maximum likelihood estimation under…

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A Semiparametric Inverse Reinforcement Learning Approach to Characterize Decision Making for Mental Disorders

刻画精神障碍决策行为的半参数逆强化学习方法

Major depressive disorder (MDD) is one of the leading causes of disability-adjusted life years. Emerging evidence indicates the presence of reward processing abnormalities in MDD. An important scientific question is whether the abnormalities are due to reduced sensitivity to received rewards or reduced learning ability. Motivated by the probabilistic reward task (PRT) experiment in the EMBARC study, we propose a semiparametric inverse reinforcement learning (RL) approach to…

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Mixed-Response State-Space Model for Analyzing Multi-Dimensional Digital Phenotypes

分析多维数字表型的混合响应状态空间模型

Digital technologies (e.g., mobile phones) can be used to obtain objective, frequent, and real-world digital phenotypes from individuals. However, modeling these data poses substantial challenges since observational data are subject to confounding and various sources of variabilities. For example, signals on patients' underlying health status and treatment effects are mixed with variation due to the living environment and measurement noises. The digital phenotype data thus…

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Marginal proportional hazards models for multivariate interval-censored data

多元区间删失数据的边际比例风险模型

Summary Multivariate interval-censored data arise when there are multiple types of events or clusters of study subjects, such that the event times are potentially correlated and when each event is only known to occur over a particular time interval. We formulate the effects of potentially time-varying covariates on the multivariate event times through marginal proportional hazards models while leaving the dependence structures of the related event times unspecified. We…

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Elastic integrative analysis of randomised trial and real-world data for treatment heterogeneity estimation

随机试验与真实世界数据的弹性整合:处理效应异质性估计

Abstract We propose a test-based elastic integrative analysis of the randomised trial and real-world data to estimate treatment effect heterogeneity with a vector of known effect modifiers. When the real-world data are not subject to bias, our approach combines the trial and real-world data for efficient estimation. Utilising the trial design, we construct a test to decide whether or not to use real-world data. We characterise the asymptotic distribution of the test-based…

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Semiparametric latent-class models for multivariate longitudinal and survival data

多变量纵向与生存数据的半参数潜在类别模型

In long-term follow-up studies, data are often collected on repeated measures of multivariate response variables as well as on time to the occurrence of a certain event. To jointly analyze such longitudinal data and survival time, we propose a general class of semiparametric latent-class models that accommodates a heterogeneous study population with flexible dependence structures between the longitudinal and survival outcomes. We combine nonparametric maximum likelihood…

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Maximum likelihood estimation for semiparametric regression models with panel count data

面板计数数据半参数回归模型的最大似然估计

Summary Panel count data, in which the observation for each study subject consists of the number of recurrent events between successive examinations, are commonly encountered in industrial reliability testing, medical research and other scientific investigations. We formulate the effects of potentially time-dependent covariates on one or more types of recurrent events through nonhomogeneous Poisson processes with random effects. We employ nonparametric maximum likelihood…

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A parsimonious personalized dose-finding model via dimension reduction

通过降维构建简约的个性化剂量探索模型

Summary Learning an individualized dose rule in personalized medicine is a challenging statistical problem. Existing methods often suffer from the curse of dimensionality, especially when the decision function is estimated nonparametrically. To tackle this problem, we propose a dimension reduction framework that effectively reduces the estimation to an optimization on a lower-dimensional subspace of the covariates. We exploit the fact that the individualized dose rule can be…

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Modelling temporal biomarkers with semiparametric nonlinear dynamical systems

用半参数非线性动力系统建模时变生物标志物

Summary Dynamical systems based on differential equations are useful for modelling the temporal evolution of biomarkers. Such systems can characterize the temporal patterns of biomarkers and inform the detection of interactions between biomarkers. Existing statistical methods for dynamical systems deal mostly with single time-course data based on a linear model or generalized additive model. Hence, they cannot adequately capture the complex interactions between biomarkers;…

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Learning Individualized Treatment Rules for Multiple-Domain Latent Outcomes

针对多领域潜在结局的个体化治疗规则学习

For many mental disorders, latent mental status from multiple-domain psychological or clinical symptoms may perform as a better characterization of the underlying disorder status than a simple summary score of the symptoms, and they may also serve as more reliable and representative features to differentiate treatment responses. Therefore, in order to address the complexity and heterogeneity of treatment responses for mental disorders, we provide a new paradigm for learning…

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Optimal Designs of Two-Phase Studies

两阶段研究的最优设计

The two-phase design is a cost-effective sampling strategy to evaluate the effects of covariates on an outcome when certain covariates are too expensive to be measured on all study subjects. Under such a design, the outcome and inexpensive covariates are measured on all subjects in the first phase and the first-phase information is used to select subjects for measurements of expensive covariates in the second phase. Previous research on two-phase studies has focused largely…

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Matched Learning for Optimizing Individualized Treatment Strategies Using Electronic Health Records

利用电子健康记录优化个体化治疗策略的匹配学习

Current guidelines for treatment decision making largely rely on data from randomized controlled trials (RCTs) studying average treatment effects. They may be inadequate to make individualized treatment decisions in real-world settings. Large-scale electronic health records (EHR) provide opportunities to fulfill the goals of personalized medicine and learn individualized treatment rules (ITRs) depending on patient-specific characteristics from real-world patient data. In…

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Robust Score Tests With Missing Data in Genomics Studies

基因组研究中含缺失数据的稳健得分检验

Analysis of genomic data is often complicated by the presence of missing values, which may arise due to cost or other reasons. The prevailing approach of single imputation is generally invalid if the imputation model is misspecified. In this paper, we propose a robust score statistic based on imputed data for testing the association between a phenotype and a genomic variable with (partially) missing values. We fit a semiparametric regression model for the genomic variable…

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Proper Inference for Value Function in High-Dimensional Q-Learning for Dynamic Treatment Regimes

Dynamic treatment regimes are a set of decision rules and each treatment decision is tailored over time according to patients' responses to previous treatments as well as covariate history. There is a growing interest in development of correct statistical inference for optimal dynamic treatment regimes to handle the challenges of non-regularity problems in the presence of non-respondents who have zero-treatment effects, especially when the dimension of the tailoring…

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Semiparametric Regression Analysis of Multiple Right- and Interval-Censored Events

多个右删失与区间删失事件的半参数回归分析

Health sciences research often involves both right- and interval-censored events because the occurrence of a symptomatic disease can only be observed up to the end of follow-up, while the occurrence of an asymptomatic disease can only be detected through periodic examinations. We formulate the effects of potentially time-dependent covariates on the joint distribution of multiple right- and interval-censored events through semiparametric proportional hazards models with…

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Counting process-based dimension reduction methods for censored outcomes

SUMMARY We propose counting process-based dimension reduction methods for right-censored survival data. Semiparametric estimating equations are constructed to estimate the dimension reduction subspace for the failure time model. Our methods address two limitations of existing approaches. First, using the counting process formulation, they do not require estimation of the censoring distribution to compensate for the bias in estimating the dimension reduction subspace. Second,…

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Semiparametric regression analysis for composite endpoints subject to componentwise censoring

分量分别删失的复合终点半参数回归分析

Composite endpoints with censored data are commonly used as study outcomes in clinical trials. For example, progression-free survival is a widely used composite endpoint, with disease progression and death as the two components. Progression-free survival time is often defined as the time from randomization to the earlier occurrence of disease progression or death from any cause. The censoring times of the two components could be different for patients not experiencing the…

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Efficient Estimation for Semiparametric Structural Equation Models With Censored Data

含删失数据的半参数结构方程模型高效估计

Structural equation modeling is commonly used to capture complex structures of relationships among multiple variables, both latent and observed. We propose a general class of structural equation models with a semiparametric component for potentially censored survival times. We consider nonparametric maximum likelihood estimation and devise a combined Expectation-Maximization and Newton-Raphson algorithm for its implementation. We establish conditions for model…

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