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Network Reconstruction From High-Dimensional Ordinary Differential Equations

从高维常微分方程重建网络

We consider the task of learning a dynamical system from high-dimensional time-course data. For instance, we might wish to estimate a gene regulatory network from gene expression data measured at discrete time points. We model the dynamical system nonparametrically as a system of additive ordinary differential equations. Most existing methods for parameter estimation in ordinary differential equations estimate the derivatives from noisy observations. This is known to be…

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The Joint Graphical Lasso for Inverse Covariance Estimation Across Multiple Classes

用于多类别逆协方差估计的联合图形套索

Summary We consider the problem of estimating multiple related Gaussian graphical models from a high dimensional data set with observations belonging to distinct classes. We propose the joint graphical lasso, which borrows strength across the classes to estimate multiple graphical models that share certain characteristics, such as the locations or weights of non-zero edges. Our approach is based on maximizing a penalized log-likelihood. We employ generalized fused lasso or…

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A Framework for Feature Selection in Clustering

聚类中的特征选择框架

We consider the problem of clustering observations using a potentially large set of features. One might expect that the true underlying clusters present in the data differ only with respect to a small fraction of the features, and will be missed if one clusters the observations using the full set of features. We propose a novel framework for sparse clustering, in which one clusters the observations using an adaptively chosen subset of the features. The method uses a…

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Covariance-Regularized Regression and Classification for high Dimensional Problems

高维问题中的协方差正则化回归与分类

Summary We propose covariance-regularized regression, a family of methods for prediction in high dimensional settings that uses a shrunken estimate of the inverse covariance matrix of the features to achieve superior prediction. An estimate of the inverse covariance matrix is obtained by maximizing the log-likelihood of the data, under a multivariate normal model, subject to a penalty; it is then used to estimate coefficients for the regression of the response onto the…

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